Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1346)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1385)	% of Background Sequences with Motif
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.034e+00	0.3411	21.0	1.56%	5.4	0.39%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-6.480e+00	0.3411	59.0	4.38%	32.8	2.34%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-2	-5.902e+00	0.3525	17.0	1.26%	4.8	0.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.785e+00	0.3525	177.0	13.13%	136.5	9.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.720e+00	0.3525	59.0	4.38%	34.3	2.45%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-5.319e+00	0.3525	10.0	0.74%	1.9	0.14%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-4.972e+00	0.3832	60.0	4.45%	38.0	2.72%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-4.629e+00	0.4726	28.0	2.08%	13.0	0.93%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-4.098e+00	0.7137	99.0	7.34%	74.4	5.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.717e+00	0.9406	11.0	0.82%	3.2	0.23%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-3.643e+00	0.9406	73.0	5.42%	53.5	3.82%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.641e+00	0.9406	14.0	1.04%	5.5	0.39%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-3.613e+00	0.9406	45.0	3.34%	29.3	2.10%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.588e+00	0.9406	25.0	1.85%	13.1	0.94%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.562e+00	0.9406	9.0	0.67%	2.0	0.15%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.560e+00	0.9406	5.0	0.37%	0.0	0.00%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-3.476e+00	0.9406	90.0	6.68%	69.6	4.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.466e+00	0.9406	7.0	0.52%	1.6	0.12%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-3.462e+00	0.9406	42.0	3.12%	27.5	1.97%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.435e+00	0.9406	15.0	1.11%	6.8	0.48%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.358e+00	0.9406	19.0	1.41%	9.5	0.68%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.315e+00	0.9406	248.0	18.40%	220.4	15.77%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-3.282e+00	0.9406	46.0	3.41%	31.8	2.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.222e+00	0.9406	10.0	0.74%	3.1	0.22%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.097e+00	0.9406	26.0	1.93%	15.3	1.09%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-2.976e+00	0.9406	11.0	0.82%	4.1	0.29%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.976e+00	0.9406	11.0	0.82%	4.1	0.29%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.915e+00	0.9406	91.0	6.75%	73.7	5.27%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.847e+00	0.9406	4.0	0.30%	0.0	0.00%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.788e+00	0.9406	12.0	0.89%	5.0	0.36%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.759e+00	0.9406	145.0	10.76%	125.5	8.98%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.744e+00	0.9406	9.0	0.67%	3.4	0.24%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.721e+00	0.9406	21.0	1.56%	12.3	0.88%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.680e+00	0.9406	70.0	5.19%	55.4	3.96%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.645e+00	0.9406	42.0	3.12%	30.7	2.20%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.623e+00	0.9406	62.0	4.60%	48.3	3.45%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.552e+00	0.9406	37.0	2.74%	26.2	1.88%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.551e+00	0.9406	95.0	7.05%	79.2	5.67%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.541e+00	0.9406	10.0	0.74%	5.0	0.36%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.541e+00	0.9406	10.0	0.74%	4.9	0.35%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.541e+00	0.9406	10.0	0.74%	5.0	0.36%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.537e+00	0.9406	46.0	3.41%	34.6	2.47%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-2.520e+00	0.9406	38.0	2.82%	27.5	1.97%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.517e+00	0.9406	14.0	1.04%	7.4	0.53%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.513e+00	0.9406	7.0	0.52%	2.2	0.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.388e+00	0.9406	97.0	7.20%	82.9	5.93%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.387e+00	0.9406	11.0	0.82%	5.3	0.38%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.387e+00	0.9406	11.0	0.82%	5.1	0.37%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-2.320e+00	0.9406	46.0	3.41%	35.0	2.51%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.320e+00	0.9406	46.0	3.41%	35.1	2.51%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.293e+00	0.9406	5.0	0.37%	1.3	0.10%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.293e+00	0.9406	5.0	0.37%	1.3	0.10%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.266e+00	0.9406	12.0	0.89%	6.5	0.47%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.163e+00	0.9406	113.0	8.38%	99.8	7.14%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.135e+00	0.9406	3.0	0.22%	0.0	0.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.135e+00	0.9406	3.0	0.22%	0.8	0.06%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.135e+00	0.9406	3.0	0.22%	0.0	0.00%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.088e+00	0.9406	14.0	1.04%	8.8	0.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.082e+00	0.9406	136.0	10.09%	122.9	8.79%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.076e+00	0.9406	63.0	4.67%	52.8	3.78%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.021e+00	0.9406	40.0	2.97%	31.8	2.27%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.019e+00	0.9406	6.0	0.45%	2.9	0.21%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.007e+00	0.9406	10.0	0.74%	5.2	0.37%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.986e+00	0.9406	198.0	14.69%	184.6	13.21%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.903e+00	0.9406	25.0	1.85%	18.3	1.31%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.900e+00	0.9406	197.0	14.61%	184.2	13.18%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.850e+00	0.9406	7.0	0.52%	3.1	0.22%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.839e+00	0.9406	12.0	0.89%	7.2	0.52%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.806e+00	0.9406	29.0	2.15%	22.8	1.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.786e+00	0.9406	30.0	2.23%	23.9	1.71%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.761e+00	0.9406	21.0	1.56%	15.8	1.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.761e+00	0.9406	21.0	1.56%	15.3	1.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.754e+00	0.9406	95.0	7.05%	85.3	6.11%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.735e+00	0.9406	4.0	0.30%	1.8	0.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.735e+00	0.9406	4.0	0.30%	1.9	0.13%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.734e+00	0.9406	8.0	0.59%	4.4	0.31%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.708e+00	0.9406	51.0	3.78%	43.5	3.11%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.663e+00	0.9410	25.0	1.85%	19.8	1.42%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.659e+00	0.9410	88.0	6.53%	79.6	5.69%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.659e+00	0.9410	88.0	6.53%	79.4	5.68%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.654e+00	0.9410	90.0	6.68%	81.2	5.81%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.649e+00	0.9410	9.0	0.67%	5.7	0.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.647e+00	0.9410	60.0	4.45%	52.8	3.78%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.646e+00	0.9410	93.0	6.90%	84.7	6.06%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.583e+00	0.9410	10.0	0.74%	6.1	0.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.583e+00	0.9410	10.0	0.74%	6.9	0.49%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.531e+00	0.9626	11.0	0.82%	7.3	0.52%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.530e+00	0.9626	56.0	4.15%	49.0	3.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.493e+00	0.9767	38.0	2.82%	32.6	2.33%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.488e+00	0.9767	12.0	0.89%	8.8	0.63%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.488e+00	0.9767	12.0	0.89%	8.7	0.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.452e+00	0.9846	13.0	0.96%	9.1	0.65%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.443e+00	0.9846	6.0	0.45%	3.0	0.22%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.423e+00	0.9925	2.0	0.15%	0.0	0.00%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.422e+00	0.9925	14.0	1.04%	10.4	0.74%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.422e+00	0.9925	14.0	1.04%	10.5	0.75%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.415e+00	0.9925	116.0	8.61%	109.3	7.82%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.411e+00	0.9925	28.0	2.08%	23.9	1.71%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.396e+00	0.9925	15.0	1.11%	12.0	0.86%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.390e+00	0.9925	236.0	17.51%	230.7	16.50%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.338e+00	1.0000	89.0	6.60%	83.1	5.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.330e+00	1.0000	103.0	7.64%	97.4	6.97%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.325e+00	1.0000	40.0	2.97%	35.3	2.53%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.324e+00	1.0000	1027.0	76.19%	1049.2	75.06%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.317e+00	1.0000	8.0	0.59%	5.6	0.40%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.307e+00	1.0000	44.0	3.26%	39.1	2.80%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.256e+00	1.0000	67.0	4.97%	62.6	4.48%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.249e+00	1.0000	75.0	5.56%	70.1	5.02%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.245e+00	1.0000	10.0	0.74%	7.0	0.50%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.207e+00	1.0000	3.0	0.22%	1.2	0.09%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.184e+00	1.0000	40.0	2.97%	36.8	2.63%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.181e+00	1.0000	13.0	0.96%	10.1	0.73%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.152e+00	1.0000	66.0	4.90%	62.5	4.47%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.150e+00	1.0000	73.0	5.42%	69.4	4.97%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.132e+00	1.0000	17.0	1.26%	14.5	1.04%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.124e+00	1.0000	18.0	1.34%	15.9	1.14%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.116e+00	1.0000	19.0	1.41%	16.8	1.20%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.109e+00	1.0000	20.0	1.48%	17.3	1.24%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.078e+00	1.0000	27.0	2.00%	24.6	1.76%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.072e+00	1.0000	29.0	2.15%	26.6	1.90%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.066e+00	1.0000	32.0	2.37%	29.2	2.09%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.062e+00	1.0000	34.0	2.52%	31.3	2.24%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.052e+00	1.0000	63.0	4.67%	60.8	4.35%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.969e-01	1.0000	8.0	0.59%	6.6	0.47%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.732e-01	1.0000	137.0	10.16%	136.7	9.78%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-9.667e-01	1.0000	11.0	0.82%	9.7	0.69%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.552e-01	1.0000	13.0	0.96%	11.1	0.80%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-9.509e-01	1.0000	14.0	1.04%	12.2	0.87%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-9.463e-01	1.0000	51.0	3.78%	49.8	3.56%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-9.434e-01	1.0000	114.0	8.46%	113.6	8.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.369e-01	1.0000	20.0	1.48%	18.1	1.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.358e-01	1.0000	21.0	1.56%	19.5	1.39%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.342e-01	1.0000	34.0	2.52%	32.5	2.33%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.328e-01	1.0000	27.0	2.00%	25.3	1.81%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.286e-01	1.0000	103.0	7.64%	103.0	7.37%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.087e-01	1.0000	176.0	13.06%	177.8	12.72%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-8.916e-01	1.0000	77.0	5.71%	76.7	5.49%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.509e-01	1.0000	241.0	17.88%	245.4	17.56%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.412e-01	1.0000	130.0	9.64%	131.9	9.44%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.187e-01	1.0000	34.0	2.52%	33.7	2.41%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.105e-01	1.0000	30.0	2.23%	29.6	2.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.062e-01	1.0000	28.0	2.08%	27.4	1.96%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.907e-01	1.0000	64.0	4.75%	64.8	4.63%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.822e-01	1.0000	18.0	1.34%	17.5	1.25%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.796e-01	1.0000	17.0	1.26%	16.3	1.17%
SeqBias: TA-repeat	TATATATATA	1e0	-7.769e-01	1.0000	398.0	29.53%	409.6	29.30%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.740e-01	1.0000	15.0	1.11%	14.3	1.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.724e-01	1.0000	155.0	11.50%	158.5	11.34%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.689e-01	1.0000	54.0	4.01%	54.1	3.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.680e-01	1.0000	13.0	0.96%	12.2	0.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.617e-01	1.0000	11.0	0.82%	10.5	0.75%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.617e-01	1.0000	11.0	0.82%	10.7	0.77%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.547e-01	1.0000	9.0	0.67%	8.6	0.62%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.526e-01	1.0000	143.0	10.61%	146.7	10.49%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.505e-01	1.0000	111.0	8.23%	113.7	8.13%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.470e-01	1.0000	7.0	0.52%	6.8	0.48%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.427e-01	1.0000	6.0	0.45%	5.5	0.40%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.427e-01	1.0000	6.0	0.45%	5.3	0.38%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.381e-01	1.0000	5.0	0.37%	5.0	0.35%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.330e-01	1.0000	4.0	0.30%	3.3	0.24%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-7.330e-01	1.0000	4.0	0.30%	3.1	0.22%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.330e-01	1.0000	4.0	0.30%	3.2	0.23%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.330e-01	1.0000	4.0	0.30%	3.5	0.25%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.272e-01	1.0000	3.0	0.22%	2.1	0.15%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.272e-01	1.0000	3.0	0.22%	2.8	0.20%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.272e-01	1.0000	3.0	0.22%	3.0	0.21%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.272e-01	1.0000	3.0	0.22%	2.9	0.21%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.272e-01	1.0000	3.0	0.22%	2.7	0.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.272e-01	1.0000	3.0	0.22%	2.7	0.19%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.272e-01	1.0000	3.0	0.22%	2.3	0.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.203e-01	1.0000	2.0	0.15%	1.7	0.12%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.203e-01	1.0000	2.0	0.15%	2.0	0.14%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.203e-01	1.0000	2.0	0.15%	1.2	0.08%
SeqBias: CA-repeat	CACACACACA	1e0	-7.151e-01	1.0000	320.0	23.74%	330.6	23.65%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.116e-01	1.0000	33.0	2.45%	33.4	2.39%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.112e-01	1.0000	1.0	0.07%	0.6	0.05%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.112e-01	1.0000	1.0	0.07%	0.0	0.00%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-7.095e-01	1.0000	427.0	31.68%	441.8	31.61%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.975e-01	1.0000	29.0	2.15%	29.2	2.09%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.937e-01	1.0000	28.0	2.08%	28.8	2.06%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.937e-01	1.0000	28.0	2.08%	28.1	2.01%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.911e-01	1.0000	82.0	6.08%	84.7	6.06%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.778e-01	1.0000	50.0	3.71%	51.7	3.70%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.682e-01	1.0000	22.0	1.63%	22.9	1.64%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.555e-01	1.0000	43.0	3.19%	44.4	3.17%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.521e-01	1.0000	42.0	3.12%	43.2	3.09%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.486e-01	1.0000	41.0	3.04%	42.5	3.04%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.473e-01	1.0000	18.0	1.34%	18.2	1.30%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.212e-01	1.0000	14.0	1.04%	14.7	1.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.206e-01	1.0000	78.0	5.79%	81.9	5.86%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.135e-01	1.0000	13.0	0.96%	13.4	0.96%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.131e-01	1.0000	32.0	2.37%	33.4	2.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.131e-01	1.0000	98.0	7.27%	102.7	7.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.051e-01	1.0000	12.0	0.89%	12.0	0.86%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.992e-01	1.0000	29.0	2.15%	30.4	2.18%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.892e-01	1.0000	27.0	2.00%	29.0	2.07%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.877e-01	1.0000	66.0	4.90%	69.0	4.94%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.859e-01	1.0000	10.0	0.74%	10.9	0.78%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.859e-01	1.0000	10.0	0.74%	10.4	0.74%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.852e-01	1.0000	45.0	3.34%	47.7	3.41%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.725e-01	1.0000	61.0	4.53%	64.7	4.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.553e-01	1.0000	116.0	8.61%	122.0	8.73%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.472e-01	1.0000	7.0	0.52%	7.4	0.53%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-5.386e-01	1.0000	34.0	2.52%	36.4	2.60%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.336e-01	1.0000	33.0	2.45%	35.6	2.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.324e-01	1.0000	18.0	1.34%	19.7	1.41%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.300e-01	1.0000	6.0	0.45%	6.2	0.45%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.300e-01	1.0000	6.0	0.45%	6.8	0.49%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.300e-01	1.0000	6.0	0.45%	6.5	0.47%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-5.240e-01	1.0000	102.0	7.57%	109.0	7.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.193e-01	1.0000	63.0	4.67%	67.4	4.82%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.113e-01	1.0000	44.0	3.26%	47.5	3.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-5.090e-01	1.0000	5.0	0.37%	5.6	0.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.067e-01	1.0000	28.0	2.08%	30.6	2.19%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.067e-01	1.0000	28.0	2.08%	30.3	2.17%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.060e-01	1.0000	284.0	21.07%	299.6	21.43%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.988e-01	1.0000	1314.0	97.48%	1363.5	97.55%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.946e-01	1.0000	26.0	1.93%	28.8	2.06%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-4.933e-01	1.0000	72.0	5.34%	77.4	5.54%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.872e-01	1.0000	70.0	5.19%	75.3	5.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.816e-01	1.0000	24.0	1.78%	26.7	1.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.752e-01	1.0000	12.0	0.89%	13.6	0.97%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.752e-01	1.0000	12.0	0.89%	13.6	0.97%
Tal1	CATCTG	1e0	-4.681e-01	1.0000	64.0	4.75%	69.1	4.95%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.628e-01	1.0000	11.0	0.82%	12.7	0.91%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.480e-01	1.0000	31.0	2.30%	34.1	2.44%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.470e-01	1.0000	3.0	0.22%	3.2	0.23%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.381e-01	1.0000	102.0	7.57%	110.3	7.89%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.351e-01	1.0000	18.0	1.34%	20.2	1.44%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.351e-01	1.0000	18.0	1.34%	20.6	1.48%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.345e-01	1.0000	41.0	3.04%	45.1	3.23%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.340e-01	1.0000	9.0	0.67%	10.1	0.73%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-4.208e-01	1.0000	128.0	9.50%	138.5	9.91%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.170e-01	1.0000	8.0	0.59%	9.2	0.66%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.149e-01	1.0000	37.0	2.74%	41.9	3.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.097e-01	1.0000	36.0	2.67%	40.2	2.88%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.087e-01	1.0000	48.0	3.56%	53.7	3.84%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.087e-01	1.0000	48.0	3.56%	53.7	3.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.079e-01	1.0000	61.0	4.53%	67.4	4.82%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.058e-01	1.0000	15.0	1.11%	17.6	1.26%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.044e-01	1.0000	35.0	2.60%	39.8	2.85%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.044e-01	1.0000	60.0	4.45%	66.9	4.79%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.027e-01	1.0000	88.0	6.53%	96.3	6.89%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.829e-01	1.0000	13.0	0.96%	15.9	1.14%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.829e-01	1.0000	13.0	0.96%	15.4	1.10%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.829e-01	1.0000	13.0	0.96%	15.9	1.14%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.756e-01	1.0000	30.0	2.23%	34.0	2.43%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.753e-01	1.0000	6.0	0.45%	7.6	0.54%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.753e-01	1.0000	6.0	0.45%	7.5	0.53%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.753e-01	1.0000	6.0	0.45%	7.4	0.53%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-3.743e-01	1.0000	52.0	3.86%	58.9	4.21%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.724e-01	1.0000	40.0	2.97%	45.8	3.27%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.564e-01	1.0000	11.0	0.82%	13.0	0.93%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.563e-01	1.0000	27.0	2.00%	31.2	2.23%
SeqBias: CG bias	SSSSSSSSSS	1e0	-3.546e-01	1.0000	390.0	28.93%	416.3	29.78%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.532e-01	1.0000	18.0	1.34%	21.1	1.51%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-3.523e-01	1.0000	192.0	14.24%	208.7	14.93%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.489e-01	1.0000	5.0	0.37%	6.5	0.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.403e-01	1.0000	44.0	3.26%	50.1	3.59%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.350e-01	1.0000	24.0	1.78%	28.8	2.06%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-3.337e-01	1.0000	1285.0	95.33%	1337.9	95.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.333e-01	1.0000	16.0	1.19%	19.1	1.37%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.333e-01	1.0000	16.0	1.19%	19.1	1.37%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.263e-01	1.0000	41.0	3.04%	47.6	3.40%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-3.167e-01	1.0000	4.0	0.30%	5.2	0.37%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.111e-01	1.0000	14.0	1.04%	17.3	1.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.090e-01	1.0000	120.0	8.90%	133.6	9.56%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.067e-01	1.0000	8.0	0.59%	10.4	0.75%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.010e-01	1.0000	36.0	2.67%	42.1	3.01%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.996e-01	1.0000	1.0	0.07%	1.7	0.12%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.996e-01	1.0000	1.0	0.07%	1.5	0.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.996e-01	1.0000	1.0	0.07%	1.2	0.09%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.996e-01	1.0000	1.0	0.07%	1.6	0.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.770e-01	1.0000	24.0	1.78%	29.3	2.10%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.705e-01	1.0000	266.0	19.73%	290.1	20.76%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.571e-01	1.0000	10.0	0.74%	13.8	0.98%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.490e-01	1.0000	61.0	4.53%	71.1	5.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.401e-01	1.0000	207.0	15.36%	229.9	16.44%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.346e-01	1.0000	25.0	1.85%	31.9	2.28%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.279e-01	1.0000	18.0	1.34%	23.8	1.70%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.233e-01	1.0000	8.0	0.59%	11.8	0.85%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.214e-01	1.0000	2.0	0.15%	3.4	0.24%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.214e-01	1.0000	2.0	0.15%	3.5	0.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.214e-01	1.0000	2.0	0.15%	3.6	0.26%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.213e-01	1.0000	53.0	3.93%	63.7	4.56%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.187e-01	1.0000	44.0	3.26%	53.2	3.80%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.151e-01	1.0000	60.0	4.45%	71.4	5.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.089e-01	1.0000	16.0	1.19%	21.4	1.53%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.989e-01	1.0000	15.0	1.11%	20.1	1.44%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.902e-01	1.0000	120.0	8.90%	138.4	9.90%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.831e-01	1.0000	43.0	3.19%	53.3	3.81%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.829e-01	1.0000	6.0	0.45%	9.9	0.71%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.822e-01	1.0000	323.0	23.96%	356.7	25.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.761e-01	1.0000	112.0	8.31%	130.6	9.35%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.736e-01	1.0000	34.0	2.52%	44.0	3.15%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.724e-01	1.0000	17.0	1.26%	23.3	1.67%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.704e-01	1.0000	89.0	6.60%	105.9	7.58%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.698e-01	1.0000	3.0	0.22%	5.1	0.37%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.660e-01	1.0000	12.0	0.89%	17.8	1.28%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.628e-01	1.0000	26.0	1.93%	34.9	2.49%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.594e-01	1.0000	5.0	0.37%	8.9	0.64%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.594e-01	1.0000	5.0	0.37%	8.7	0.62%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.594e-01	1.0000	5.0	0.37%	8.3	0.59%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.536e-01	1.0000	30.0	2.23%	39.1	2.80%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.507e-01	1.0000	24.0	1.78%	32.9	2.36%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.469e-01	1.0000	96.0	7.12%	114.7	8.20%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.412e-01	1.0000	1.0	0.07%	2.1	0.15%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.412e-01	1.0000	1.0	0.07%	2.3	0.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.412e-01	1.0000	1.0	0.07%	2.1	0.15%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.412e-01	1.0000	1.0	0.07%	2.4	0.17%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.305e-01	1.0000	56.0	4.15%	70.7	5.06%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.270e-01	1.0000	25.0	1.85%	34.8	2.49%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.269e-01	1.0000	94.0	6.97%	113.2	8.10%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.260e-01	1.0000	1079.0	80.04%	1142.1	81.71%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.252e-01	1.0000	2.0	0.15%	4.9	0.35%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.252e-01	1.0000	2.0	0.15%	4.3	0.31%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.248e-01	1.0000	12.0	0.89%	18.6	1.33%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.248e-01	1.0000	12.0	0.89%	18.9	1.35%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.230e-01	1.0000	1259.0	93.40%	1319.9	94.43%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.229e-01	1.0000	1278.0	94.81%	1337.7	95.70%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.215e-01	1.0000	24.0	1.78%	33.2	2.38%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.184e-01	1.0000	19.0	1.41%	27.5	1.97%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.038e-01	1.0000	3.0	0.22%	6.0	0.43%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.256e-02	1.0000	19.0	1.41%	28.4	2.03%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.607e-02	1.0000	26.0	1.93%	37.2	2.66%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.526e-02	1.0000	37.0	2.74%	52.0	3.72%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-7.482e-02	1.0000	10.0	0.74%	17.5	1.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.170e-02	1.0000	46.0	3.41%	62.4	4.46%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.170e-02	1.0000	46.0	3.41%	62.9	4.50%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.077e-02	1.0000	2.0	0.15%	5.9	0.42%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.970e-02	1.0000	5.0	0.37%	10.5	0.75%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.929e-02	1.0000	1.0	0.07%	3.4	0.24%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.929e-02	1.0000	1.0	0.07%	3.4	0.25%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.929e-02	1.0000	1.0	0.07%	3.8	0.27%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.848e-02	1.0000	22.0	1.63%	33.4	2.39%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-5.052e-02	1.0000	94.0	6.97%	120.3	8.61%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.872e-02	1.0000	67.0	4.97%	89.6	6.41%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.224e-02	1.0000	16.0	1.19%	27.2	1.95%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-3.981e-02	1.0000	2.0	0.15%	6.0	0.43%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.461e-02	1.0000	1.0	0.07%	4.7	0.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.461e-02	1.0000	1.0	0.07%	4.1	0.30%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.355e-02	1.0000	4.0	0.30%	10.6	0.76%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.069e-02	1.0000	44.0	3.26%	64.0	4.58%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.743e-02	1.0000	1.0	0.07%	5.4	0.39%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.614e-02	1.0000	6.0	0.45%	15.6	1.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.536e-02	1.0000	43.0	3.19%	66.1	4.73%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.523e-02	1.0000	64.0	4.75%	92.8	6.64%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.168e-02	1.0000	58.0	4.30%	86.2	6.17%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.161e-02	1.0000	5.0	0.37%	14.0	1.00%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.983e-03	1.0000	12.0	0.89%	26.2	1.88%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.664e-03	1.0000	3.0	0.22%	11.4	0.81%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.658e-03	1.0000	4.0	0.30%	13.3	0.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.012e-03	1.0000	58.0	4.30%	90.3	6.46%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-5.740e-04	1.0000	64.0	4.75%	107.1	7.66%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-5.720e-04	1.0000	12.0	0.89%	33.5	2.39%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.20%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-0.000e+00	1.0000	0.0	0.00%	3.4	0.25%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	3.7	0.27%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1348.0	100.00%	1397.7	100.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.05%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.04%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.10%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.07%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.09%