Information for 8-CAGTRAGCCG (Motif 10)


Reverse Opposite:

p-value:1e-6
log p-value:-1.583e+01
Information Content per bp:1.738
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets45.5 +/- 20.4bp
Average Position of motif in Background14.8 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR1(MacIsaac)/Yeast

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGTRAGCCG
-TGGAAGCCC

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGTRAGCCG
--ATAATCCC

eyg/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTRAGCCG--
NCNNACTCAGTGANTACTC

GCR1/Literature(Harbison)/Yeast

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGTRAGCCG
GAGGAAGCC-

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGTRAGCCG----
SCAGYCADGCATGAC

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAGTRAGCCG
----CAGCC-

Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGTRAGCCG
WCAGGTAGVM-

GCR1/MA0304.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGTRAGCCG
-TGGAAGCC-

CAD1/CAD1_YPD/2-CAD1,2-YAP1(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGTRAGCCG
ATTAGTAAGC--

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGTRAGCCG
ACAGGAAGTG-