Information for 11-ATAACGAA (Motif 12)


Reverse Opposite:

p-value:1e-4
log p-value:-1.127e+01
Information Content per bp:1.809
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.64%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets31.5 +/- 17.9bp
Average Position of motif in Background29.6 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

lbe/MA0231.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATAACGAA
-TAACTA-

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----ATAACGAA---
AAAAATAACAAACGG

hb/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ATAACGAA
CAATAAAAAA

Lbe/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATAACGAA
NGTTAACTAG

TFAM/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ATAACGAA
GATAA----

DAL80/Literature(Harbison)/Yeast

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATAACGAA
GATAA----

DAL80(MacIsaac)/Yeast

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATAACGAA
GATAA----

HMBOX1/MA0895.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATAACGAA-
GTTAACTAGN

lbl/MA0232.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATAACGAA
-TAATTA-

hb/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATAACGAA
ATAAAAAA