Information for 12-AGGGACCG (Motif 13)


Reverse Opposite:

p-value:1e-4
log p-value:-1.054e+01
Information Content per bp:1.803
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets34.8 +/- 20.2bp
Average Position of motif in Background36.5 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:AGGGACCG
AGGGTCC-

NRG1(MacIsaac)/Yeast

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGGGACCG
AGGGTCC-

TCP5/MA1067.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGGGACCG-
-GGGACCAC

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AGGGACCG-
NNGGGACCAC

ARALYDRAFT_496250/MA1096.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGGGACCG-
-GGGACCAC

NRG1/MA0347.1/Jaspar

Match Rank:6
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------AGGGACCG-----
CTAGATCAGGGTCCATCGCA

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----AGGGACCG
GGTTAGAGACCT

PHD1(MacIsaac)/Yeast

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGACCG
AGGCAC--

TCP4/MA1035.1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGGGACCG-
-GGGACCAC

RTG3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGGGACCG
-GTGACC-