Information for 1-YGGGAGGCHGAG (Motif 2)


Reverse Opposite:

p-value:1e-20
log p-value:-4.626e+01
Information Content per bp:1.623
Number of Target Sequences with motif214.0
Percentage of Target Sequences with motif28.84%
Number of Background Sequences with motif63.5
Percentage of Background Sequences with motif9.53%
Average Position of motif in Targets37.5 +/- 17.8bp
Average Position of motif in Background44.5 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:YGGGAGGCHGAG-
---GAGSCCGAGC

CRZ1(MacIsaac)/Yeast

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:YGGGAGGCHGAG
---GAGGCTG--

ADR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:YGGGAGGCHGAG
-NGGAGG-----

ADR1(MacIsaac)/Yeast

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:YGGGAGGCHGAG
-NGGAGG-----

SP1/MA0079.3/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YGGGAGGCHGAG-
--GGGGGCGGGGC

SP2/MA0516.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--YGGGAGGCHGAG-
GGGNGGGGGCGGGGC

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YGGGAGGCHGAG---
-AGGGGGCGGGGCTG

CRZ1/MA0285.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:YGGGAGGCHGAG
---GTGGCTNNG

SeqBias: GA-repeat

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:YGGGAGGCHGAG-
---GAGAGAGAGA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:YGGGAGGCHGAG
-GGGAGGACNG-