Information for 3-CCATCACG (Motif 3)


Reverse Opposite:

p-value:1e-16
log p-value:-3.902e+01
Information Content per bp:1.629
Number of Target Sequences with motif159.0
Percentage of Target Sequences with motif21.43%
Number of Background Sequences with motif40.8
Percentage of Background Sequences with motif6.13%
Average Position of motif in Targets40.5 +/- 20.0bp
Average Position of motif in Background34.7 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mitf/MA0620.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCATCACG---
-GGTCACGTGG

BIM1/MA0964.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCATCACG---
-NNNCACGTGN

MLX/MA0663.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCATCACG----
--ATCACGTGAT

Unknown2/Drosophila-Promoters/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCATCACG-
-CATCMCTA

TYE7/TYE7_YPD/39-CBF1(Harbison)/Yeast

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCATCACG---
--ATCACGTGA

MLXIPL/MA0664.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCATCACG----
--ATCACGTGAT

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCATCACG----
--ATCACGTGAC

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCATCACG--
----CACGCA

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCATCACG---
---GCACGTNC

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCATCACG-
-AGTCACGC