Information for 5-GAGATCAG (Motif 4)


Reverse Opposite:

p-value:1e-14
log p-value:-3.343e+01
Information Content per bp:1.613
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif13.07%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets42.1 +/- 19.7bp
Average Position of motif in Background29.4 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GAGATCAG
CAGATCA-

TOD6?/SacCer-Promoters/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GAGATCAG--
GCGATGAGMT

Gata4/MA0482.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGATCAG-
NNGAGATAAGA

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGATCAG--
NAGATAAGNN

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GAGATCAG-
-AGATAAGA

Gata1/MA0035.3/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAGATCAG--
ANAGATAAGAA

GAT1/GAT1_RAPA/1-GZF3,2-GLN3(Harbison)/Yeast

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGATCAG
-AGATAAG

GAT1(MacIsaac)/Yeast

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGATCAG
-AGATAAG

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGATCAG--
CAGATAAGGN

GATA2/MA0036.2/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAGATCAG-----
NCAGATAAGAANNN