Information for 3-YTTCAAGTGA (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.818e+01
Information Content per bp:1.641
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif12.67%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets37.7 +/- 17.6bp
Average Position of motif in Background38.5 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

vnd/dmmpmm(Noyes_hd)/fly

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:YTTCAAGTGA
TTTCAAGTGA

vnd/MA0253.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:YTTCAAGTGA
TTTCAAGTG-

tin/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:YTTCAAGTGA
--TCAAGTG-

vnd/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:YTTCAAGTGA
-CTCAAGTG-

ceh-22/MA0264.1/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:YTTCAAGTGA-
TTTCAAGTGGN

MA0264.1_ceh-22/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:YTTCAAGTGA-
TTTCAAGTGGN

tin/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YTTCAAGTGA
-CTCAAGTG-

tin/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.77
Offset:0
Orientation:forward strand
Alignment:YTTCAAGTGA
NCTCAAGTGG

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---YTTCAAGTGA----
NANTTTCAAGTGGTTAN

tin/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:YTTCAAGTGA
--TCAAGTG-