Information for 7-TGTGCCAHGGTG (Motif 9)


Reverse Opposite:

p-value:1e-7
log p-value:-1.751e+01
Information Content per bp:1.731
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.87%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets37.7 +/- 19.3bp
Average Position of motif in Background48.6 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGTGCCAHGGTG
CGTGCCAAG---

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGTGCCAHGGTG
--TGCCAAG---

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGTGCCAHGGTG
--TGCCAAG---

RIM101/MA0368.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGTGCCAHGGTG
--CGCCAAG---

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTGCCAHGGTG
GGTGCCAAGT--

slbo/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGTGCCAHGGTG
TTTGCAAT----

slbo/MA0244.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGTGCCAHGGTG
TTTGCAAT----

CUP9/MA0288.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTGCCAHGGTG
AATGTGTCA-----

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGTGCCAHGGTG
--TGCCAA----

GCN4(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGTGCCAHGGTG
TGAGTCAT----