Information for 16-ATCACAAAGC (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.928e+01
Information Content per bp:1.743
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets36.8 +/- 20.5bp
Average Position of motif in Background40.7 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:ATCACAAAGC
---ACAAAG-

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:ATCACAAAGC
VRRACAAWGG

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATCACAAAGC
ACATCAAAGG

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:ATCACAAAGC-----
---ACAAAGGNBCCT

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATCACAAAGC
AAAACAAAGG

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATCACAAAGC----
AGAAGAACAAAGGACTA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ATCACAAAGC
--RACAAWGG

Dof2/MA0020.1/Jaspar

Match Rank:8
Score:0.72
Offset:5
Orientation:forward strand
Alignment:ATCACAAAGC-
-----AAAGCA

cad/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATCACAAAGC
ATCATAAAA-

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATCACAAAGC----
ATAAGAACAAAGGACTA