Information for 18-GGAAGGAAAG (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.665e+01
Information Content per bp:1.706
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif6.60%
Number of Background Sequences with motif32.1
Percentage of Background Sequences with motif2.38%
Average Position of motif in Targets38.2 +/- 18.9bp
Average Position of motif in Background33.7 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR2/MA0305.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGGAAAG
NGGAAGC----

UME1/UME1_YPD/[](Harbison)/Yeast

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGAAGGAAAG---
--AAGGAAANGTA

GCR2(MacIsaac)/Yeast

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGGAAAG
NGGAAGC----

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGGAAAG-
AGAAACGAAAGT

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAAGGAAAG--------
GGAAGGAAGGAAGGAAGG

SeqBias: G/A bias

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAAGGAAAG
AAAAAAAAAA

Eip74EF/MA0026.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGAAGGAAAG
CCGGAAG-----

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGAAGGAAAG
TGGGGAAGGGCM-

MF0001.1_ETS_class/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAAGGAAAG
ACCGGAAG-----

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAAGGAAAG
GGGCGGGAAGG