Information for 12-CACACACACAVA (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-7.740e+00
Information Content per bp:1.767
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets38.6 +/- 17.8bp
Average Position of motif in Background19.9 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CA-repeat

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CACACACACAVA
CACACACACA--

daf-12/MA0538.1/Jaspar

Match Rank:2
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CACACACACAVA
NACGCACACACACAC-

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CACACACACAVA
AGCGGCACACACGCAA-

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACACACACAVA
CRCCCACGCA--

RAP1(MacIsaac)/Yeast

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CACACACACAVA
ACACCCATACAC-

RAP1/MA0359.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACACACACAVA
CACCCATACA--

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACACACACAVA---
CGAAGCACACAAAATA

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CACACACACAVA
---GCAAACAM-

RAP1/RAP1_YPD/85-RAP1(Harbison)/Yeast

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACACACACAVA
CACCCGTACA--

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACACACACAVA
GCCACACCCA----