Information for 13-AGGTTGCA (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-7.476e+00
Information Content per bp:1.530
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif3.04%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets51.2 +/- 14.6bp
Average Position of motif in Background40.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RCS1(MacIsaac)/Yeast

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGGTTGCA
-GGGTGCA

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGGTTGCA--
-GGGTGCANT

AFT2(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGGTTGCA
-GGGTGCA

RFX1/MA0365.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGGTTGCA-
-GGTTGCCA

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTTGCA-
NATGTTGCAA

PHD1/MA0355.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGTTGCA---
-NGNTGCAGGN

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGTTGCA--
-GGTGGCAAA

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----AGGTTGCA---
NNTGTAGGTAGCANNT

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTGCA---
GGGATTGCATNN

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AGGTTGCA---
NNNTTAGGTAGCNTNT