Information for 2-AGGCATGA (Motif 3)


Reverse Opposite:

p-value:1e-24
log p-value:-5.749e+01
Information Content per bp:1.561
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif11.13%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif1.72%
Average Position of motif in Targets33.8 +/- 17.0bp
Average Position of motif in Background46.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MOT3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGGCATGA
NAGGCA---

MOT3(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGGCATGA
NAGGCA---

MOT3/MA0340.1/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGGCATGA
AAGGCA---

pros/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGGCATGA
AGNCATG-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGCATGA--
AAGGCAAGTGT

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGCATGA
AGGTGTGA

hkb/MA0450.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGCATGA
GGGGCGTGA

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGCATGA----
CAAAGGCGTGGCCAG

hkb/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGCATGA--
GGGGGCGTGANG

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCATGA
AGGTGTGA