Information for 3-GGAGAATSGC (Motif 6)


Reverse Opposite:

p-value:1e-21
log p-value:-4.916e+01
Information Content per bp:1.707
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif8.16%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets33.8 +/- 16.7bp
Average Position of motif in Background30.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YNR063W/MA0432.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGAGAATSGC
TCGGAGAT----

Rel/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGAGAATSGC-
GGGGAATCCCN

PDR8/MA0354.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGAGAATSGC
ACGGAGAT----

dif/Rel/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAGAATSGC-
GGGGAATCCCC

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGAGAATSGC
TTGACCGAGAATTCC

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGAATSGC
GNNACCGAGAATNNN

TEC1/TEC1_YPD/[](Harbison)/Yeast

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGAGAATSGC
-AGGAATG--

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAATSGC
GGGAGGACNG-

ttk/MA0460.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAGAATSGC
AAGGATAAT---

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGAGAATSGC----
GGAGAAAGGTGCGA