Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1347)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1348)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-6	-1.398e+01	0.0003	109.0	8.09%	50.0	3.71%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-5	-1.346e+01	0.0003	96.0	7.12%	42.6	3.16%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-4	-1.028e+01	0.0044	95.0	7.05%	48.1	3.57%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-9.733e+00	0.0057	14.0	1.04%	0.9	0.07%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-4	-9.723e+00	0.0057	202.0	14.99%	135.1	10.02%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-9.444e+00	0.0057	99.0	7.34%	53.8	3.99%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-9.325e+00	0.0057	55.0	4.08%	22.8	1.69%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-4	-9.286e+00	0.0057	85.0	6.31%	43.6	3.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-8.626e+00	0.0077	160.0	11.87%	104.5	7.76%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-3	-8.408e+00	0.0086	98.0	7.27%	55.4	4.11%
SeqBias: TA-repeat	TATATATATA	1e-3	-7.895e+00	0.0131	362.0	26.85%	286.2	21.24%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-7.785e+00	0.0134	84.0	6.23%	46.0	3.42%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-3	-7.641e+00	0.0143	11.0	0.82%	0.0	0.00%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.522e+00	0.0150	38.0	2.82%	14.2	1.05%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-7.397e+00	0.0158	80.0	5.93%	44.8	3.33%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-3	-7.085e+00	0.0203	43.0	3.19%	18.1	1.34%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-6.771e+00	0.0261	55.0	4.08%	27.8	2.06%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-6.706e+00	0.0263	109.0	8.09%	69.1	5.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-6.530e+00	0.0297	82.0	6.08%	48.4	3.59%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.518e+00	0.0297	69.0	5.12%	38.7	2.87%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-6.489e+00	0.0297	78.0	5.79%	45.3	3.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-6.328e+00	0.0314	22.0	1.63%	6.5	0.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.804e+00	0.0508	105.0	7.79%	69.3	5.14%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.593e+00	0.0601	183.0	13.58%	137.6	10.21%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.542e+00	0.0606	88.0	6.53%	56.9	4.22%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-5.225e+00	0.0801	233.0	17.28%	184.5	13.69%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.104e+00	0.0871	110.0	8.16%	76.4	5.67%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-5.079e+00	0.0871	98.0	7.27%	66.9	4.96%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.074e+00	0.0871	14.0	1.04%	3.7	0.28%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-4.851e+00	0.1009	22.0	1.63%	8.8	0.65%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-4.823e+00	0.1009	25.0	1.85%	10.9	0.81%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-4.673e+00	0.1130	57.0	4.23%	34.6	2.57%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-4.571e+00	0.1214	86.0	6.38%	58.4	4.33%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.444e+00	0.1337	21.0	1.56%	8.8	0.66%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-4.424e+00	0.1337	160.0	11.87%	123.6	9.17%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.389e+00	0.1337	31.0	2.30%	15.4	1.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-4.322e+00	0.1388	28.0	2.08%	14.0	1.04%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-4.185e+00	0.1551	14.0	1.04%	4.4	0.33%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.183e+00	0.1551	90.0	6.68%	63.0	4.67%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.070e+00	0.1653	23.0	1.71%	10.7	0.79%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.063e+00	0.1653	68.0	5.04%	45.8	3.40%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.860e+00	0.1942	36.0	2.67%	20.8	1.54%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.800e+00	0.2013	46.0	3.41%	28.8	2.13%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.750e+00	0.2069	33.0	2.45%	18.5	1.37%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.622e+00	0.2298	49.0	3.64%	31.7	2.35%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.460e+00	0.2589	14.0	1.04%	5.9	0.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.460e+00	0.2589	14.0	1.04%	5.4	0.40%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.440e+00	0.2589	47.0	3.49%	30.0	2.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.339e+00	0.2802	49.0	3.64%	32.7	2.42%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.291e+00	0.2880	18.0	1.34%	8.5	0.63%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.203e+00	0.3083	52.0	3.86%	35.6	2.64%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.125e+00	0.3270	23.0	1.71%	12.1	0.90%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-3.023e+00	0.3552	20.0	1.48%	10.5	0.78%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.000e+00	0.3568	279.0	20.70%	244.7	18.15%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.984e+00	0.3568	45.0	3.34%	30.1	2.23%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.978e+00	0.3568	34.0	2.52%	22.0	1.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.932e+00	0.3616	17.0	1.26%	8.2	0.61%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.786e+00	0.4115	32.0	2.37%	20.5	1.52%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.775e+00	0.4115	6.0	0.45%	1.1	0.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.773e+00	0.4115	4.0	0.30%	0.0	0.00%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.773e+00	0.4115	4.0	0.30%	0.8	0.06%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.730e+00	0.4115	23.0	1.71%	13.6	1.01%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.700e+00	0.4130	19.0	1.41%	10.9	0.81%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-2.674e+00	0.4170	40.0	2.97%	27.7	2.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.594e+00	0.4448	30.0	2.23%	19.1	1.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.521e+00	0.4715	21.0	1.56%	12.4	0.92%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-2.516e+00	0.4715	557.0	41.32%	520.5	38.62%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.491e+00	0.4715	32.0	2.37%	22.0	1.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.489e+00	0.4715	45.0	3.34%	32.9	2.44%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-2.452e+00	0.4761	355.0	26.34%	323.4	23.99%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.397e+00	0.4958	56.0	4.15%	42.8	3.18%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.390e+00	0.4958	18.0	1.34%	10.9	0.81%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.364e+00	0.4986	14.0	1.04%	7.3	0.54%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.295e+00	0.5267	44.0	3.26%	32.0	2.38%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.257e+00	0.5400	11.0	0.82%	5.6	0.42%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.257e+00	0.5400	462.0	34.27%	430.6	31.95%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.232e+00	0.5400	211.0	15.65%	187.8	13.93%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-2.222e+00	0.5400	39.0	2.89%	28.8	2.14%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.214e+00	0.5400	5.0	0.37%	1.1	0.08%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-2.214e+00	0.5400	5.0	0.37%	1.7	0.13%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.133e+00	0.5591	12.0	0.89%	6.2	0.46%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.133e+00	0.5591	12.0	0.89%	6.4	0.47%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.109e+00	0.5658	43.0	3.19%	32.7	2.42%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.056e+00	0.5896	37.0	2.74%	27.1	2.01%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.016e+00	0.5991	9.0	0.67%	4.9	0.36%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.016e+00	0.5991	9.0	0.67%	4.8	0.36%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.992e+00	0.6070	58.0	4.30%	46.4	3.44%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.976e+00	0.6097	49.0	3.64%	38.8	2.88%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.969e+00	0.6097	19.0	1.41%	12.4	0.92%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.935e+00	0.6141	6.0	0.45%	2.2	0.17%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.935e+00	0.6141	6.0	0.45%	2.2	0.17%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.902e+00	0.6280	138.0	10.24%	121.3	9.00%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.894e+00	0.6280	10.0	0.74%	5.7	0.42%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.827e+00	0.6624	22.0	1.63%	15.1	1.12%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.789e+00	0.6812	23.0	1.71%	16.0	1.19%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.783e+00	0.6812	50.0	3.71%	40.9	3.04%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.753e+00	0.6910	24.0	1.78%	17.3	1.28%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.730e+00	0.6999	66.0	4.90%	55.4	4.11%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.709e+00	0.7080	361.0	26.78%	339.4	25.18%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.708e+00	0.7080	34.0	2.52%	26.1	1.94%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.642e+00	0.7421	8.0	0.59%	4.8	0.36%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.638e+00	0.7421	28.0	2.08%	21.6	1.61%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.614e+00	0.7478	29.0	2.15%	22.7	1.69%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.600e+00	0.7514	14.0	1.04%	9.1	0.67%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.517e+00	0.8083	24.0	1.78%	18.6	1.38%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.508e+00	0.8083	1320.0	97.92%	1312.1	97.34%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.485e+00	0.8118	5.0	0.37%	2.5	0.19%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.485e+00	0.8118	5.0	0.37%	2.3	0.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.483e+00	0.8118	10.0	0.74%	6.8	0.50%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.482e+00	0.8118	1292.0	95.85%	1282.3	95.14%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.476e+00	0.8118	17.0	1.26%	12.7	0.94%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.472e+00	0.8118	26.0	1.93%	20.8	1.55%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.472e+00	0.8118	26.0	1.93%	21.0	1.56%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.427e+00	0.8118	11.0	0.82%	7.7	0.57%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.427e+00	0.8118	11.0	0.82%	7.3	0.54%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.427e+00	0.8118	11.0	0.82%	7.5	0.55%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.386e+00	0.8133	2.0	0.15%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.386e+00	0.8133	2.0	0.15%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.386e+00	0.8133	2.0	0.15%	0.0	0.00%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.381e+00	0.8133	12.0	0.89%	8.6	0.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.371e+00	0.8133	6.0	0.45%	3.8	0.28%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.342e+00	0.8291	66.0	4.90%	58.4	4.33%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.308e+00	0.8437	14.0	1.04%	10.5	0.78%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.308e+00	0.8437	14.0	1.04%	10.8	0.80%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.296e+00	0.8471	38.0	2.82%	32.4	2.40%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.293e+00	0.8471	7.0	0.52%	4.1	0.30%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.279e+00	0.8480	15.0	1.11%	11.5	0.85%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.267e+00	0.8514	41.0	3.04%	35.1	2.61%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.236e+00	0.8716	8.0	0.59%	5.2	0.39%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.231e+00	0.8716	17.0	1.26%	13.2	0.98%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.214e+00	0.8776	69.0	5.12%	62.5	4.64%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.192e+00	0.8902	9.0	0.67%	6.6	0.49%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.176e+00	0.8975	20.0	1.48%	16.2	1.20%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.161e+00	0.9044	21.0	1.56%	17.2	1.28%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.128e+00	0.9282	11.0	0.82%	8.7	0.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.123e+00	0.9282	24.0	1.78%	20.7	1.54%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.088e+00	0.9519	76.0	5.64%	70.9	5.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.067e+00	0.9519	4.0	0.30%	2.5	0.19%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.067e+00	0.9519	4.0	0.30%	2.3	0.17%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.067e+00	0.9519	4.0	0.30%	2.5	0.19%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.067e+00	0.9519	4.0	0.30%	2.6	0.19%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.060e+00	0.9519	31.0	2.30%	27.4	2.03%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.006e+00	0.9892	72.0	5.34%	67.4	5.00%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.750e-01	0.9998	6.0	0.45%	4.6	0.34%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-9.750e-01	0.9998	6.0	0.45%	4.3	0.32%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.750e-01	0.9998	6.0	0.45%	4.6	0.34%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-9.527e-01	1.0000	56.0	4.15%	52.5	3.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.481e-01	1.0000	7.0	0.52%	5.3	0.39%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.275e-01	1.0000	8.0	0.59%	6.1	0.45%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.147e-01	1.0000	33.0	2.45%	31.0	2.30%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.089e-01	1.0000	78.0	5.79%	75.0	5.56%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.862e-01	1.0000	11.0	0.82%	9.8	0.73%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.765e-01	1.0000	12.0	0.89%	10.7	0.79%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.680e-01	1.0000	13.0	0.96%	11.3	0.84%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.612e-01	1.0000	54.0	4.01%	51.6	3.83%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.517e-01	1.0000	60.0	4.45%	58.0	4.30%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-8.449e-01	1.0000	65.0	4.82%	62.8	4.66%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.326e-01	1.0000	76.0	5.64%	74.0	5.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.244e-01	1.0000	85.0	6.31%	82.5	6.12%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.825e-01	1.0000	43.0	3.19%	41.5	3.08%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.584e-01	1.0000	76.0	5.64%	74.2	5.51%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-7.405e-01	1.0000	1083.0	80.34%	1080.6	80.17%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.928e-01	1.0000	1.0	0.07%	0.8	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.928e-01	1.0000	1.0	0.07%	1.0	0.07%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.928e-01	1.0000	1.0	0.07%	0.4	0.03%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.928e-01	1.0000	1.0	0.07%	0.8	0.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.928e-01	1.0000	1.0	0.07%	0.0	0.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.926e-01	1.0000	2.0	0.15%	1.1	0.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.926e-01	1.0000	2.0	0.15%	2.0	0.15%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.926e-01	1.0000	2.0	0.15%	1.9	0.14%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.923e-01	1.0000	4.0	0.30%	3.7	0.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.922e-01	1.0000	5.0	0.37%	4.6	0.34%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.922e-01	1.0000	5.0	0.37%	4.4	0.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.921e-01	1.0000	6.0	0.45%	5.4	0.40%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.921e-01	1.0000	6.0	0.45%	5.1	0.38%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.921e-01	1.0000	7.0	0.52%	6.7	0.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.921e-01	1.0000	7.0	0.52%	6.7	0.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.920e-01	1.0000	8.0	0.59%	7.2	0.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.919e-01	1.0000	9.0	0.67%	8.8	0.65%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.917e-01	1.0000	12.0	0.89%	11.3	0.84%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.915e-01	1.0000	15.0	1.11%	14.8	1.10%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.915e-01	1.0000	15.0	1.11%	14.2	1.05%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.915e-01	1.0000	16.0	1.19%	16.0	1.18%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.914e-01	1.0000	17.0	1.26%	16.1	1.20%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.900e-01	1.0000	55.0	4.08%	54.7	4.06%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.891e-01	1.0000	87.0	6.45%	86.7	6.43%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.317e-01	1.0000	98.0	7.27%	98.5	7.31%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.070e-01	1.0000	43.0	3.19%	43.9	3.26%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.938e-01	1.0000	31.0	2.30%	31.6	2.34%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.799e-01	1.0000	102.0	7.57%	103.2	7.66%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-5.696e-01	1.0000	82.0	6.08%	83.9	6.22%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.359e-01	1.0000	11.0	0.82%	11.1	0.82%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.359e-01	1.0000	11.0	0.82%	11.2	0.83%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.105e-01	1.0000	32.0	2.37%	33.8	2.51%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.016e-01	1.0000	7.0	0.52%	8.0	0.59%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.016e-01	1.0000	7.0	0.52%	7.2	0.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.016e-01	1.0000	7.0	0.52%	7.6	0.56%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-4.977e-01	1.0000	64.0	4.75%	66.3	4.92%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.971e-01	1.0000	27.0	2.00%	28.7	2.13%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.885e-01	1.0000	6.0	0.45%	6.5	0.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.756e-01	1.0000	21.0	1.56%	22.5	1.67%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.720e-01	1.0000	5.0	0.37%	5.6	0.42%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.720e-01	1.0000	5.0	0.37%	5.3	0.40%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-4.505e-01	1.0000	4.0	0.30%	4.6	0.34%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.503e-01	1.0000	16.0	1.19%	17.5	1.30%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.447e-01	1.0000	35.0	2.60%	37.6	2.79%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.447e-01	1.0000	35.0	2.60%	37.8	2.81%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.204e-01	1.0000	3.0	0.22%	3.6	0.26%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.204e-01	1.0000	3.0	0.22%	3.6	0.26%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.117e-01	1.0000	11.0	0.82%	12.9	0.96%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.057e-01	1.0000	24.0	1.78%	26.4	1.96%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.895e-01	1.0000	9.0	0.67%	10.5	0.78%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.806e-01	1.0000	35.0	2.60%	38.6	2.86%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.741e-01	1.0000	2.0	0.15%	2.9	0.21%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.741e-01	1.0000	2.0	0.15%	2.3	0.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.702e-01	1.0000	194.0	14.39%	202.2	15.00%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.501e-01	1.0000	27.0	2.00%	30.2	2.24%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.491e-01	1.0000	89.0	6.60%	95.8	7.10%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.455e-01	1.0000	26.0	1.93%	29.7	2.21%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-3.436e-01	1.0000	41.0	3.04%	45.1	3.34%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.241e-01	1.0000	35.0	2.60%	39.5	2.93%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.205e-01	1.0000	34.0	2.52%	38.2	2.84%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.196e-01	1.0000	5.0	0.37%	6.2	0.46%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-3.196e-01	1.0000	5.0	0.37%	6.4	0.47%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.130e-01	1.0000	20.0	1.48%	23.3	1.73%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.089e-01	1.0000	31.0	2.30%	35.8	2.66%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.951e-01	1.0000	41.0	3.04%	46.9	3.48%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.919e-01	1.0000	4.0	0.30%	5.1	0.38%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.919e-01	1.0000	4.0	0.30%	5.4	0.40%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.919e-01	1.0000	4.0	0.30%	5.4	0.40%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.873e-01	1.0000	1.0	0.07%	1.1	0.08%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.873e-01	1.0000	1.0	0.07%	1.5	0.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.873e-01	1.0000	1.0	0.07%	1.7	0.13%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.854e-01	1.0000	38.0	2.82%	43.7	3.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.846e-01	1.0000	16.0	1.19%	19.2	1.43%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.746e-01	1.0000	65.0	4.82%	72.4	5.37%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.733e-01	1.0000	8.0	0.59%	10.0	0.74%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.587e-01	1.0000	21.0	1.56%	25.5	1.89%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.561e-01	1.0000	3.0	0.22%	4.5	0.34%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.561e-01	1.0000	3.0	0.22%	5.0	0.37%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.561e-01	1.0000	3.0	0.22%	4.6	0.34%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.561e-01	1.0000	3.0	0.22%	4.7	0.35%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.524e-01	1.0000	20.0	1.48%	24.8	1.84%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.492e-01	1.0000	40.0	2.97%	46.4	3.44%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.369e-01	1.0000	6.0	0.45%	8.7	0.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.309e-01	1.0000	25.0	1.85%	30.3	2.24%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-2.304e-01	1.0000	93.0	6.90%	103.2	7.66%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.300e-01	1.0000	136.0	10.09%	148.3	11.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.265e-01	1.0000	73.0	5.42%	82.3	6.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.200e-01	1.0000	32.0	2.37%	38.4	2.85%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.144e-01	1.0000	5.0	0.37%	7.0	0.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.083e-01	1.0000	21.0	1.56%	26.9	2.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.071e-01	1.0000	2.0	0.15%	3.7	0.28%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.071e-01	1.0000	2.0	0.15%	3.2	0.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.071e-01	1.0000	2.0	0.15%	3.3	0.24%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.065e-01	1.0000	14.0	1.04%	18.7	1.39%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.065e-01	1.0000	14.0	1.04%	18.2	1.35%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.027e-01	1.0000	28.0	2.08%	34.6	2.57%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.920e-01	1.0000	100.0	7.42%	112.1	8.32%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.897e-01	1.0000	1257.0	93.25%	1267.0	94.00%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.877e-01	1.0000	4.0	0.30%	6.1	0.45%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.831e-01	1.0000	24.0	1.78%	31.0	2.30%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.830e-01	1.0000	52.0	3.86%	61.2	4.54%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.829e-01	1.0000	110.0	8.16%	123.3	9.15%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.816e-01	1.0000	17.0	1.26%	22.8	1.69%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.803e-01	1.0000	7.0	0.52%	10.2	0.76%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.757e-01	1.0000	39.0	2.89%	47.5	3.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.757e-01	1.0000	39.0	2.89%	47.8	3.55%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.691e-01	1.0000	37.0	2.74%	45.7	3.39%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.657e-01	1.0000	36.0	2.67%	44.7	3.32%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.649e-01	1.0000	45.0	3.34%	54.2	4.02%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.580e-01	1.0000	14.0	1.04%	19.5	1.45%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.550e-01	1.0000	33.0	2.45%	41.4	3.07%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.512e-01	1.0000	99.0	7.34%	113.3	8.40%
Tal1	CATCTG	1e0	-1.511e-01	1.0000	60.0	4.45%	71.6	5.31%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.493e-01	1.0000	13.0	0.96%	18.9	1.40%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.436e-01	1.0000	30.0	2.23%	38.1	2.83%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.413e-01	1.0000	17.0	1.26%	23.4	1.74%
SeqBias: CA-repeat	CACACACACA	1e0	-1.406e-01	1.0000	289.0	21.44%	312.3	23.17%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.349e-01	1.0000	956.0	70.92%	981.1	72.79%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.332e-01	1.0000	1.0	0.07%	2.2	0.16%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.332e-01	1.0000	1.0	0.07%	2.1	0.16%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.332e-01	1.0000	1.0	0.07%	2.6	0.19%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.181e-01	1.0000	24.0	1.78%	32.9	2.44%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.153e-01	1.0000	2.0	0.15%	4.6	0.34%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.098e-01	1.0000	50.0	3.71%	62.0	4.60%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.088e-01	1.0000	22.0	1.63%	31.0	2.30%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.075e-01	1.0000	41.0	3.04%	52.6	3.90%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.059e-01	1.0000	27.0	2.00%	36.9	2.74%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.017e-01	1.0000	32.0	2.37%	42.1	3.12%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.839e-02	1.0000	31.0	2.30%	41.5	3.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.813e-02	1.0000	8.0	0.59%	13.0	0.97%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.354e-02	1.0000	3.0	0.22%	6.3	0.46%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.320e-02	1.0000	5.0	0.37%	9.6	0.71%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.320e-02	1.0000	5.0	0.37%	9.4	0.70%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.614e-02	1.0000	7.0	0.52%	12.3	0.91%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.313e-02	1.0000	13.0	0.96%	20.7	1.54%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.617e-02	1.0000	12.0	0.89%	19.9	1.48%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.617e-02	1.0000	12.0	0.89%	19.5	1.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.594e-02	1.0000	49.0	3.64%	63.1	4.68%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.533e-02	1.0000	83.0	6.16%	101.9	7.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.512e-02	1.0000	4.0	0.30%	8.5	0.63%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.353e-02	1.0000	6.0	0.45%	11.1	0.82%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.353e-02	1.0000	6.0	0.45%	11.0	0.82%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.188e-02	1.0000	34.0	2.52%	46.5	3.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.749e-02	1.0000	27.0	2.00%	39.0	2.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.429e-02	1.0000	1.0	0.07%	3.0	0.22%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.415e-02	1.0000	2.0	0.15%	5.1	0.38%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.112e-02	1.0000	13.0	0.96%	21.4	1.59%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.873e-02	1.0000	29.0	2.15%	41.1	3.05%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.866e-02	1.0000	16.0	1.19%	25.2	1.87%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.531e-02	1.0000	12.0	0.89%	20.1	1.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-3.870e-02	1.0000	18.0	1.34%	29.9	2.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.549e-02	1.0000	2.0	0.15%	6.2	0.46%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.549e-02	1.0000	2.0	0.15%	7.0	0.52%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.549e-02	1.0000	2.0	0.15%	7.0	0.52%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.289e-02	1.0000	3.0	0.22%	8.2	0.61%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.157e-02	1.0000	1.0	0.07%	4.5	0.33%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.157e-02	1.0000	1.0	0.07%	4.3	0.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.719e-02	1.0000	47.0	3.49%	66.5	4.94%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.438e-02	1.0000	5.0	0.37%	12.9	0.96%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.264e-02	1.0000	93.0	6.90%	120.5	8.94%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.204e-02	1.0000	47.0	3.49%	67.4	5.00%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.994e-02	1.0000	111.0	8.23%	141.6	10.51%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.920e-02	1.0000	3.0	0.22%	9.7	0.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.875e-02	1.0000	23.0	1.71%	38.6	2.87%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.816e-02	1.0000	70.0	5.19%	95.3	7.07%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.744e-02	1.0000	9.0	0.67%	19.5	1.45%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.562e-02	1.0000	1.0	0.07%	5.6	0.41%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.562e-02	1.0000	1.0	0.07%	5.7	0.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.494e-02	1.0000	48.0	3.56%	70.2	5.21%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.426e-02	1.0000	38.0	2.82%	59.0	4.37%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.314e-02	1.0000	50.0	3.71%	73.0	5.42%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.170e-02	1.0000	9.0	0.67%	20.4	1.52%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.110e-02	1.0000	3.0	0.22%	10.1	0.75%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.104e-02	1.0000	256.0	18.99%	303.1	22.49%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.065e-02	1.0000	2.0	0.15%	8.1	0.60%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.451e-03	1.0000	25.0	1.85%	43.6	3.24%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.967e-03	1.0000	22.0	1.63%	40.1	2.98%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-6.309e-03	1.0000	118.0	8.75%	156.6	11.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.222e-03	1.0000	4.0	0.30%	13.1	0.97%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.880e-03	1.0000	101.0	7.49%	138.9	10.30%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.499e-03	1.0000	7.0	0.52%	19.1	1.42%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.472e-03	1.0000	86.0	6.38%	122.0	9.05%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.687e-03	1.0000	15.0	1.11%	32.9	2.44%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.192e-03	1.0000	58.0	4.30%	89.5	6.64%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.088e-03	1.0000	14.0	1.04%	32.7	2.43%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.923e-03	1.0000	1.0	0.07%	8.6	0.64%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.923e-03	1.0000	1.0	0.07%	8.9	0.66%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.841e-03	1.0000	10.0	0.74%	26.4	1.96%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.736e-03	1.0000	15.0	1.11%	34.0	2.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.592e-03	1.0000	91.0	6.75%	132.8	9.85%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.374e-03	1.0000	9.0	0.67%	25.4	1.89%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.570e-04	1.0000	1.0	0.07%	9.4	0.69%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.740e-04	1.0000	12.0	0.89%	31.2	2.32%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.700e-04	1.0000	7.0	0.52%	23.3	1.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.710e-04	1.0000	12.0	0.89%	32.9	2.44%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.180e-04	1.0000	100.0	7.42%	148.7	11.03%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.580e-04	1.0000	168.0	12.46%	229.9	17.06%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.380e-04	1.0000	37.0	2.74%	73.4	5.45%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.180e-04	1.0000	1.0	0.07%	12.1	0.90%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.300e-05	1.0000	128.0	9.50%	191.8	14.23%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-5.000e-05	1.0000	9.0	0.67%	32.4	2.41%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.200e-05	1.0000	14.0	1.04%	44.4	3.30%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.000e-06	1.0000	1211.0	89.84%	1274.5	94.56%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	4.2	0.31%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	4.4	0.33%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.03%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.06%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1348.0	100.00%	1347.9	100.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%