Information for 1-CTGTAATCCC (Motif 1)


Reverse Opposite:

p-value:1e-13
log p-value:-3.014e+01
Information Content per bp:1.810
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif4.68%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets36.5 +/- 19.2bp
Average Position of motif in Background35.3 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CTGTAATCCC-
---TAATCCCN

oc/MA0234.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CTGTAATCCC
---TAATCC-

bcd/MA0212.1/Jaspar

Match Rank:3
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CTGTAATCCC
---TAATCC-

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CTGTAATCCC
--TTAATCCC

Gsc/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CTGTAATCCC
---TAATCC-

Gsc/MA0190.1/Jaspar

Match Rank:6
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CTGTAATCCC
---TAATCC-

Ptx1/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTGTAATCCC
NGTTAATCCC

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CTGTAATCCC
-CTTAATCCC

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CTGTAATCCC
--YTAATCCY

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTGTAATCCC-----
NTTGTTAATCCCTCTNN