Information for 11-GCCAGSCTGG (Motif 13)


Reverse Opposite:

p-value:1e-5
log p-value:-1.314e+01
Information Content per bp:1.618
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif4.81%
Number of Background Sequences with motif31.7
Percentage of Background Sequences with motif1.92%
Average Position of motif in Targets38.3 +/- 19.4bp
Average Position of motif in Background33.3 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCCAGSCTGG--
TGCCCTGAGGGCA

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGSCTGG--
TGCCCTNAGGGCA

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGSCTGG--
TGCCCTNAGGGCA

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCCAGSCTGG--
GGGGCTYGKCTGGGA

ACE2/MA0267.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCCAGSCTGG-
----TGCTGGT

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGSCTGG
GCNGCCATCTTG-

SWI5/MA0402.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCCAGSCTGG--
----TGCTGGTT

SWI5(MacIsaac)/Yeast

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCCAGSCTGG--
----TGCTGGTT

ACE2(MacIsaac)/Yeast

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCCAGSCTGG--
----GGCGGGTT

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGSCTGG
TGCCAA-----