Information for 14-CCTTTCAAAG (Motif 16)


Reverse Opposite:

p-value:1e-5
log p-value:-1.240e+01
Information Content per bp:1.700
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif3.73%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets32.4 +/- 19.3bp
Average Position of motif in Background41.4 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pan/dmmpmm(Papatsenko)/fly

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:CCTTTCAAAG
---ATCAAAG

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCTTTCAAAG
CGGTTTCAAA-

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCTTTCAAAG--
CCTTTTATAGNC

pan/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCTTTCAAAG
--GATCAAAG

pan/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCTTTCAAAG
--TATCAAA-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTTTCAAAG-
-ACATCAAAGG

exd/MA0222.1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCTTTCAAAG
--TGTCAAAN

pan/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCTTTCAAAG
---ATCAAA-

exd/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCTTTCAAAG
NTTGTCAAAN

PBF/MA0064.1/Jaspar

Match Rank:10
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CCTTTCAAAG-
------AAAGC