Information for 15-TCCCAAGAAT (Motif 18)


Reverse Opposite:

p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.657
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets37.3 +/- 17.8bp
Average Position of motif in Background46.4 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TCCCAAGAAT
ATTTCCAAGAA-

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TCCCAAGAAT
TTCCKNAGAA-

RIM101/Literature(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCCCAAGAAT
TGCCAAG---

RIM101(MacIsaac)/Yeast

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCCCAAGAAT
TGCCAAG---

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCCCAAGAAT
ANTTCTNNAGAA-

STAT3/MA0144.2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAAGAAT
TTTCCCAGAAN

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAAGAAT----
TTTCCTGGAAAGNNN

RIM101/MA0368.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCCCAAGAAT
CGCCAAG---

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCCCAAGAAT
GGTGCCAAGT--

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCCCAAGAAT
NTTTCTNAGAAA