Information for 6-GGGGTCAA (Motif 19)


Reverse Opposite:

p-value:1e-4
log p-value:-9.948e+00
Information Content per bp:1.876
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets34.2 +/- 20.0bp
Average Position of motif in Background43.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAA----
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTCAA----
NTNNNGGGGTCANGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAA----
GGCGAGGGGTCAAGGGC

usp/MA0016.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGGGTCAA--
GGGGTCACGG

usp/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGGGTCAA-
GGGGTCACG

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGGTCAA--
GGTATCAAAT

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTCAA----
TNNNNGGTGTCATNTNT

Hr46/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGGGTCAA
-GGGTCA-

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAA---
AGAGCGGGGTCAAGTA

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAA---
CGCGCCGGGTCACGTA