Information for 2-TCTAATTG (Motif 3)


Reverse Opposite:

p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.892
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif9.37%
Number of Background Sequences with motif59.1
Percentage of Background Sequences with motif3.58%
Average Position of motif in Targets37.8 +/- 20.3bp
Average Position of motif in Background38.8 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

inv/dmmpmm(Noyes)/fly

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TCTAATTG
TCTAATTA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.87
Offset:1
Orientation:forward strand
Alignment:TCTAATTG-
-CTAATKGV

inv/MA0229.1/Jaspar

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:TCTAATTG
TCTAATTA

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:TCTAATTG-
-NTAATTGN

Inv/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TCTAATTG-
NTCTAATTAN

YHP1/MA0426.1/Jaspar

Match Rank:6
Score:0.84
Offset:2
Orientation:forward strand
Alignment:TCTAATTG
--TAATTG

YHP1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.84
Offset:2
Orientation:forward strand
Alignment:TCTAATTG
--TAATTG

YHP1(MacIsaac)/Yeast

Match Rank:8
Score:0.84
Offset:2
Orientation:forward strand
Alignment:TCTAATTG
--TAATTG

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TCTAATTG-
-NTAATTGN

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TCTAATTG-
-NTAATTGG