Information for 5-GAAATGTCAT (Motif 6)


Reverse Opposite:

p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.658
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets41.1 +/- 17.9bp
Average Position of motif in Background20.9 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GAAATGTCAT
ANGNAAAGGTCA-

unc-62/MA0918.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GAAATGTCAT--
GAGCTGTCATTT

PB0169.1_Sox15_2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGTCAT----
TNGAATTTCATTNAN

sd/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GAAATGTCAT
CCGAGGAATGTC--

sd/MA0243.1/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GAAATGTCAT
NCGANGAATGTC--

ems/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:GAAATGTCAT--
----TGTCATNA

sd/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGTCAT--
TCGAATTTCNTTG

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAAATGTCAT--
--NCTGTCANNT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GAAATGTCAT---
TCTCAAAGGTCACGAG

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GAAATGTCAT
---NTGTCAN