Information for 4-CAAAYAMACAAA (Motif 9)


Reverse Opposite:

p-value:1e-6
log p-value:-1.575e+01
Information Content per bp:1.754
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif7.85%
Number of Background Sequences with motif60.9
Percentage of Background Sequences with motif3.69%
Average Position of motif in Targets38.3 +/- 17.4bp
Average Position of motif in Background39.1 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CA-repeat

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CAAAYAMACAAA
CACACACACA--

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CAAAYAMACAAA
-AAATAAACA--

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAAAYAMACAAA-
-AAACAAACATTC

PB0016.1_Foxj1_1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAAAYAMACAAA----
AAAGTAAACAAAAATT

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAAAYAMACAAA-
CAAAAGTAAACAAAG

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:6
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CAAAYAMACAAA
---GCAAACAM-

Foxj3/MA0851.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAAAYAMACAAA---
AAAAAGTAAACAAACAC

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAAAYAMACAAA---
AAAAAGTAAACAAACAC

br-Z3/dmmpmm(Down)/fly

Match Rank:9
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAAAYAMACAAA-
---ATAAACAAAA

HCM1/MA0317.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CAAAYAMACAAA
---ATAAACAA-