Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1579)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1667)	% of Background Sequences with Motif
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.912e+00	0.0522	18.0	1.14%	2.5	0.15%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-8.606e+00	0.0522	12.0	0.76%	0.9	0.05%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-3	-7.867e+00	0.0522	124.0	7.85%	81.4	4.93%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-7.702e+00	0.0522	34.0	2.15%	12.1	0.73%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-6.362e+00	0.1336	293.0	18.54%	242.1	14.66%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-2	-6.069e+00	0.1491	19.0	1.20%	5.8	0.35%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.016e+00	0.1491	30.0	1.90%	12.5	0.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-5.732e+00	0.1568	8.0	0.51%	0.0	0.00%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.404e+00	0.1935	71.0	4.49%	45.6	2.76%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.392e+00	0.1935	24.0	1.52%	9.4	0.57%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-5.080e+00	0.2189	17.0	1.08%	5.9	0.36%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-4.548e+00	0.3416	19.0	1.20%	7.2	0.44%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-4.185e+00	0.4534	82.0	5.19%	59.5	3.60%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.164e+00	0.4534	21.0	1.33%	9.4	0.57%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-4.144e+00	0.4534	10.0	0.63%	2.6	0.16%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-4.067e+00	0.4534	96.0	6.08%	72.5	4.39%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-4.050e+00	0.4534	63.0	3.99%	43.6	2.64%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.937e+00	0.4534	13.0	0.82%	4.0	0.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.907e+00	0.4534	41.0	2.59%	25.1	1.52%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-3.661e+00	0.4973	1194.0	75.57%	1197.4	72.52%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.600e+00	0.5037	30.0	1.90%	17.7	1.07%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.560e+00	0.5037	91.0	5.76%	70.1	4.24%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.464e+00	0.5267	12.0	0.76%	4.2	0.25%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.327e+00	0.5787	34.0	2.15%	21.7	1.31%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.030e+00	0.7479	104.0	6.58%	85.2	5.16%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.963e+00	0.7689	50.0	3.16%	36.2	2.19%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.963e+00	0.7689	35.0	2.22%	23.7	1.43%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.938e+00	0.7689	19.0	1.20%	10.7	0.65%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.897e+00	0.7689	44.0	2.78%	31.9	1.93%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-2.893e+00	0.7689	6.0	0.38%	1.6	0.10%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.863e+00	0.7689	4.0	0.25%	0.9	0.05%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.820e+00	0.7689	12.0	0.76%	5.4	0.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.800e+00	0.7689	16.0	1.01%	9.0	0.54%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.756e+00	0.7689	49.0	3.10%	36.4	2.20%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.642e+00	0.7878	115.0	7.28%	98.3	5.95%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.569e+00	0.8238	10.0	0.63%	4.2	0.26%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.551e+00	0.8238	14.0	0.89%	7.5	0.46%
SeqBias: TA-repeat	TATATATATA	1e-1	-2.537e+00	0.8238	467.0	29.56%	450.8	27.30%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.467e+00	0.8419	80.0	5.06%	66.0	4.00%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.451e+00	0.8419	15.0	0.95%	8.2	0.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.426e+00	0.8419	27.0	1.71%	18.8	1.14%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.416e+00	0.8419	11.0	0.70%	5.9	0.36%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.406e+00	0.8419	87.0	5.51%	73.4	4.44%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.379e+00	0.8419	58.0	3.67%	46.8	2.83%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.363e+00	0.8419	47.0	2.97%	36.6	2.21%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.337e+00	0.8419	97.0	6.14%	83.6	5.06%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.311e+00	0.8419	5.0	0.32%	1.9	0.12%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.311e+00	0.8419	5.0	0.32%	1.9	0.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.309e+00	0.8419	8.0	0.51%	3.5	0.21%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.226e+00	0.8419	33.0	2.09%	24.9	1.51%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.119e+00	0.9118	14.0	0.89%	9.0	0.54%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.119e+00	0.9118	50.0	3.16%	40.3	2.44%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.038e+00	0.9513	6.0	0.38%	2.3	0.14%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.004e+00	0.9663	83.0	5.25%	72.1	4.36%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.949e+00	1.0000	68.0	4.30%	58.2	3.52%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.934e+00	1.0000	224.0	14.18%	212.8	12.89%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.903e+00	1.0000	76.0	4.81%	66.4	4.02%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.870e+00	1.0000	7.0	0.44%	3.7	0.22%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.870e+00	1.0000	7.0	0.44%	3.7	0.23%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.840e+00	1.0000	43.0	2.72%	35.6	2.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.749e+00	1.0000	4.0	0.25%	1.8	0.11%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.749e+00	1.0000	4.0	0.25%	1.2	0.07%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.749e+00	1.0000	4.0	0.25%	1.9	0.11%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.707e+00	1.0000	100.0	6.33%	91.2	5.52%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.679e+00	1.0000	66.0	4.18%	58.6	3.55%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.620e+00	1.0000	30.0	1.90%	24.9	1.51%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.606e+00	1.0000	10.0	0.63%	6.5	0.39%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.606e+00	1.0000	10.0	0.63%	6.7	0.41%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.606e+00	1.0000	10.0	0.63%	6.6	0.40%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.605e+00	1.0000	52.0	3.29%	45.7	2.77%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.604e+00	1.0000	97.0	6.14%	89.5	5.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.589e+00	1.0000	113.0	7.15%	106.0	6.42%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.567e+00	1.0000	5.0	0.32%	2.2	0.13%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.554e+00	1.0000	11.0	0.70%	7.3	0.44%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.530e+00	1.0000	74.0	4.68%	67.4	4.08%
Tal1	CATCTG	1e0	-1.514e+00	1.0000	83.0	5.25%	76.6	4.64%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.512e+00	1.0000	12.0	0.76%	8.5	0.52%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.512e+00	1.0000	23.0	1.46%	18.3	1.11%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.512e+00	1.0000	23.0	1.46%	18.9	1.15%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.505e+00	1.0000	43.0	2.72%	37.5	2.27%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.494e+00	1.0000	112.0	7.09%	105.1	6.37%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.489e+00	1.0000	46.0	2.91%	40.2	2.43%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.483e+00	1.0000	25.0	1.58%	20.7	1.25%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.477e+00	1.0000	13.0	0.82%	9.2	0.56%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.459e+00	1.0000	6.0	0.38%	3.0	0.18%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.459e+00	1.0000	6.0	0.38%	3.4	0.20%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.448e+00	1.0000	14.0	0.89%	10.8	0.65%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.431e+00	1.0000	2.0	0.13%	0.8	0.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.431e+00	1.0000	2.0	0.13%	0.6	0.04%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.431e+00	1.0000	2.0	0.13%	0.8	0.05%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.431e+00	1.0000	2.0	0.13%	0.0	0.00%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.430e+00	1.0000	30.0	1.90%	25.6	1.55%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.402e+00	1.0000	111.0	7.03%	105.5	6.39%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.401e+00	1.0000	16.0	1.01%	12.4	0.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.394e+00	1.0000	35.0	2.22%	31.0	1.87%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.387e+00	1.0000	7.0	0.44%	4.2	0.25%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.387e+00	1.0000	7.0	0.44%	4.5	0.27%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.382e+00	1.0000	37.0	2.34%	32.4	1.96%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.382e+00	1.0000	37.0	2.34%	32.1	1.94%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.382e+00	1.0000	287.0	18.16%	284.5	17.23%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.356e+00	1.0000	43.0	2.72%	38.4	2.32%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.335e+00	1.0000	8.0	0.51%	6.0	0.36%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.327e+00	1.0000	54.0	3.42%	49.8	3.01%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.326e+00	1.0000	55.0	3.48%	50.8	3.08%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.320e+00	1.0000	59.0	3.73%	54.0	3.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.317e+00	1.0000	116.0	7.34%	112.0	6.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.305e+00	1.0000	23.0	1.46%	19.6	1.19%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.269e+00	1.0000	28.0	1.77%	24.6	1.49%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.265e+00	1.0000	10.0	0.63%	7.5	0.45%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.258e+00	1.0000	240.0	15.19%	238.3	14.43%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.241e+00	1.0000	11.0	0.70%	8.7	0.53%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.220e+00	1.0000	12.0	0.76%	9.3	0.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.215e+00	1.0000	46.0	2.91%	42.6	2.58%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.213e+00	1.0000	47.0	2.97%	43.7	2.65%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.204e+00	1.0000	65.0	4.11%	61.6	3.73%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.204e+00	1.0000	13.0	0.82%	10.8	0.65%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.204e+00	1.0000	13.0	0.82%	10.0	0.61%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.204e+00	1.0000	13.0	0.82%	10.2	0.62%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.189e+00	1.0000	14.0	0.89%	11.2	0.68%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.178e+00	1.0000	447.0	28.29%	453.4	27.46%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.167e+00	1.0000	16.0	1.01%	14.0	0.85%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.143e+00	1.0000	19.0	1.20%	16.8	1.01%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.129e+00	1.0000	4.0	0.25%	2.0	0.12%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.127e+00	1.0000	22.0	1.39%	19.8	1.20%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.100e+00	1.0000	32.0	2.03%	29.0	1.76%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.095e+00	1.0000	38.0	2.41%	35.2	2.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.093e+00	1.0000	48.0	3.04%	45.3	2.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.093e+00	1.0000	47.0	2.97%	44.7	2.71%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.093e+00	1.0000	46.0	2.91%	43.5	2.64%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.036e+00	1.0000	132.0	8.35%	131.3	7.95%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.028e+00	1.0000	7.0	0.44%	6.0	0.36%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.018e+00	1.0000	121.0	7.66%	120.4	7.29%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.006e+00	1.0000	64.0	4.05%	62.8	3.80%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.854e-01	1.0000	11.0	0.70%	9.5	0.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.810e-01	1.0000	46.0	2.91%	44.8	2.71%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-9.799e-01	1.0000	12.0	0.76%	11.0	0.67%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.799e-01	1.0000	12.0	0.76%	10.5	0.64%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.755e-01	1.0000	13.0	0.82%	11.4	0.69%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.720e-01	1.0000	14.0	0.89%	12.5	0.76%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.692e-01	1.0000	15.0	0.95%	13.7	0.83%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.656e-01	1.0000	32.0	2.03%	30.6	1.85%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.638e-01	1.0000	18.0	1.14%	16.5	1.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.628e-01	1.0000	19.0	1.20%	17.2	1.04%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.628e-01	1.0000	19.0	1.20%	18.0	1.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.621e-01	1.0000	20.0	1.27%	18.5	1.12%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.913e-01	1.0000	52.0	3.29%	51.7	3.13%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-8.869e-01	1.0000	50.0	3.16%	49.2	2.98%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-8.775e-01	1.0000	116.0	7.34%	117.9	7.14%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.175e-01	1.0000	58.0	3.67%	59.0	3.57%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.148e-01	1.0000	57.0	3.61%	57.7	3.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.071e-01	1.0000	19.0	1.20%	18.5	1.12%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.040e-01	1.0000	53.0	3.35%	53.2	3.22%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.934e-01	1.0000	15.0	0.95%	14.1	0.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.860e-01	1.0000	13.0	0.82%	12.7	0.77%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-7.805e-01	1.0000	100.0	6.33%	102.6	6.22%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.781e-01	1.0000	11.0	0.70%	10.7	0.65%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.773e-01	1.0000	72.0	4.56%	73.2	4.43%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.693e-01	1.0000	69.0	4.37%	70.8	4.29%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-7.648e-01	1.0000	8.0	0.51%	7.4	0.45%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.648e-01	1.0000	8.0	0.51%	7.4	0.45%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.648e-01	1.0000	8.0	0.51%	7.5	0.45%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.545e-01	1.0000	6.0	0.38%	5.5	0.33%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.543e-01	1.0000	37.0	2.34%	37.6	2.28%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.542e-01	1.0000	211.0	13.35%	218.2	13.21%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.488e-01	1.0000	5.0	0.32%	4.7	0.28%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.352e-01	1.0000	3.0	0.19%	2.4	0.15%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.352e-01	1.0000	3.0	0.19%	2.0	0.12%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.352e-01	1.0000	3.0	0.19%	2.3	0.14%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.352e-01	1.0000	3.0	0.19%	2.3	0.14%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.352e-01	1.0000	3.0	0.19%	2.2	0.13%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.316e-01	1.0000	31.0	1.96%	31.4	1.90%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.316e-01	1.0000	31.0	1.96%	32.0	1.94%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.275e-01	1.0000	30.0	1.90%	30.1	1.82%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.267e-01	1.0000	2.0	0.13%	2.0	0.12%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.267e-01	1.0000	2.0	0.13%	1.8	0.11%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.267e-01	1.0000	2.0	0.13%	1.3	0.08%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.267e-01	1.0000	2.0	0.13%	1.1	0.06%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.249e-01	1.0000	54.0	3.42%	55.6	3.37%
SeqBias: CA-repeat	CACACACACA	1e0	-7.166e-01	1.0000	395.0	25.00%	411.1	24.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.164e-01	1.0000	75.0	4.75%	77.2	4.68%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.154e-01	1.0000	1.0	0.06%	0.8	0.05%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.154e-01	1.0000	1.0	0.06%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.154e-01	1.0000	1.0	0.06%	0.9	0.06%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.154e-01	1.0000	1.0	0.06%	0.0	0.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-7.154e-01	1.0000	1.0	0.06%	1.0	0.06%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.154e-01	1.0000	1.0	0.06%	0.6	0.04%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.154e-01	1.0000	1.0	0.06%	0.0	0.00%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.146e-01	1.0000	27.0	1.71%	27.4	1.66%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.107e-01	1.0000	73.0	4.62%	75.4	4.57%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.048e-01	1.0000	71.0	4.49%	73.6	4.46%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.010e-01	1.0000	47.0	2.97%	48.6	2.95%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.600e-01	1.0000	17.0	1.08%	17.3	1.05%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.530e-01	1.0000	16.0	1.01%	16.9	1.02%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.456e-01	1.0000	15.0	0.95%	15.2	0.92%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.378e-01	1.0000	14.0	0.89%	14.2	0.86%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.293e-01	1.0000	13.0	0.82%	13.5	0.82%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.173e-01	1.0000	182.0	11.52%	191.3	11.59%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.059e-01	1.0000	26.0	1.65%	27.4	1.66%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.993e-01	1.0000	10.0	0.63%	10.7	0.65%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.993e-01	1.0000	59.0	3.73%	62.5	3.78%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.971e-01	1.0000	41.0	2.59%	43.7	2.64%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.958e-01	1.0000	76.0	4.81%	80.3	4.86%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.736e-01	1.0000	8.0	0.51%	8.8	0.53%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.730e-01	1.0000	36.0	2.28%	38.4	2.33%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.576e-01	1.0000	388.0	24.56%	409.4	24.80%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.409e-01	1.0000	17.0	1.08%	18.8	1.14%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-5.409e-01	1.0000	17.0	1.08%	18.9	1.15%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.397e-01	1.0000	6.0	0.38%	6.6	0.40%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.397e-01	1.0000	6.0	0.38%	6.7	0.41%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.366e-01	1.0000	495.0	31.33%	522.1	31.62%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.220e-01	1.0000	15.0	0.95%	16.9	1.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.177e-01	1.0000	5.0	0.32%	5.6	0.34%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.177e-01	1.0000	5.0	0.32%	5.3	0.32%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-5.177e-01	1.0000	5.0	0.32%	5.4	0.33%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.137e-01	1.0000	39.0	2.47%	42.3	2.56%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-5.089e-01	1.0000	131.0	8.29%	140.7	8.52%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.005e-01	1.0000	95.0	6.01%	102.4	6.20%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.003e-01	1.0000	13.0	0.82%	14.7	0.89%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.882e-01	1.0000	12.0	0.76%	13.6	0.83%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.882e-01	1.0000	12.0	0.76%	13.4	0.81%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.758e-01	1.0000	72.0	4.56%	78.9	4.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.634e-01	1.0000	128.0	8.10%	138.3	8.38%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-4.597e-01	1.0000	111.0	7.03%	120.5	7.30%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.586e-01	1.0000	126.0	7.97%	136.4	8.26%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.553e-01	1.0000	53.0	3.35%	58.2	3.52%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.547e-01	1.0000	156.0	9.87%	168.4	10.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.532e-01	1.0000	3.0	0.19%	3.6	0.22%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.532e-01	1.0000	3.0	0.19%	3.4	0.20%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.484e-01	1.0000	153.0	9.68%	165.2	10.01%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.472e-01	1.0000	39.0	2.47%	44.0	2.66%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-4.376e-01	1.0000	49.0	3.10%	54.2	3.28%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.301e-01	1.0000	16.0	1.01%	18.3	1.11%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.236e-01	1.0000	238.0	15.06%	256.8	15.55%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.190e-01	1.0000	15.0	0.95%	17.5	1.06%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.073e-01	1.0000	14.0	0.89%	16.7	1.01%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.066e-01	1.0000	7.0	0.44%	8.2	0.49%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.037e-01	1.0000	42.0	2.66%	47.9	2.90%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.034e-01	1.0000	22.0	1.39%	26.0	1.57%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-3.992e-01	1.0000	307.0	19.43%	331.0	20.05%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.991e-01	1.0000	2.0	0.13%	2.3	0.14%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.982e-01	1.0000	76.0	4.81%	84.7	5.13%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.939e-01	1.0000	51.0	3.23%	57.3	3.47%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.869e-01	1.0000	29.0	1.84%	33.8	2.05%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.857e-01	1.0000	20.0	1.27%	23.6	1.43%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.857e-01	1.0000	20.0	1.27%	23.3	1.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.813e-01	1.0000	12.0	0.76%	14.4	0.87%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-3.792e-01	1.0000	122.0	7.72%	134.2	8.13%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.668e-01	1.0000	11.0	0.70%	13.6	0.82%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-3.558e-01	1.0000	5.0	0.32%	6.2	0.37%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-3.539e-01	1.0000	152.0	9.62%	167.3	10.13%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.512e-01	1.0000	74.0	4.68%	83.0	5.03%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.463e-01	1.0000	51.0	3.23%	58.7	3.55%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.143e-01	1.0000	159.0	10.06%	176.1	10.67%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.090e-01	1.0000	13.0	0.82%	16.6	1.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.042e-01	1.0000	116.0	7.34%	130.4	7.90%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.025e-01	1.0000	1.0	0.06%	1.8	0.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.025e-01	1.0000	1.0	0.06%	1.2	0.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.025e-01	1.0000	1.0	0.06%	1.6	0.10%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.025e-01	1.0000	1.0	0.06%	1.8	0.11%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-3.025e-01	1.0000	1.0	0.06%	1.1	0.07%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.024e-01	1.0000	81.0	5.13%	92.1	5.58%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.963e-01	1.0000	18.0	1.14%	22.5	1.36%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.936e-01	1.0000	7.0	0.44%	9.6	0.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.807e-01	1.0000	3.0	0.19%	4.5	0.27%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.753e-01	1.0000	16.0	1.01%	20.3	1.23%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.748e-01	1.0000	29.0	1.84%	35.1	2.12%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-2.698e-01	1.0000	6.0	0.38%	9.0	0.54%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.676e-01	1.0000	147.0	9.30%	166.0	10.05%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.519e-01	1.0000	40.0	2.53%	48.8	2.96%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.484e-01	1.0000	32.0	2.03%	39.5	2.39%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.473e-01	1.0000	19.0	1.20%	24.5	1.49%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.425e-01	1.0000	5.0	0.32%	7.5	0.46%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.403e-01	1.0000	71.0	4.49%	83.2	5.04%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.361e-01	1.0000	30.0	1.90%	37.3	2.26%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.332e-01	1.0000	60.0	3.80%	71.2	4.31%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.295e-01	1.0000	106.0	6.71%	123.0	7.45%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.280e-01	1.0000	17.0	1.08%	22.1	1.34%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.280e-01	1.0000	17.0	1.08%	22.5	1.36%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.268e-01	1.0000	12.0	0.76%	16.5	1.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.248e-01	1.0000	2.0	0.13%	3.4	0.20%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.248e-01	1.0000	2.0	0.13%	3.8	0.23%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.109e-01	1.0000	4.0	0.25%	6.5	0.39%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.072e-01	1.0000	15.0	0.95%	20.1	1.22%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.905e-01	1.0000	72.0	4.56%	86.7	5.25%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.879e-01	1.0000	6.0	0.38%	9.9	0.60%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.839e-01	1.0000	78.0	4.94%	93.0	5.63%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.828e-01	1.0000	9.0	0.57%	13.1	0.80%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.765e-01	1.0000	283.0	17.91%	317.4	19.22%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.724e-01	1.0000	26.0	1.65%	34.4	2.09%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.724e-01	1.0000	26.0	1.65%	34.9	2.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.659e-01	1.0000	20.0	1.27%	27.0	1.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.651e-01	1.0000	71.0	4.49%	86.2	5.22%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.636e-01	1.0000	5.0	0.32%	8.4	0.51%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.636e-01	1.0000	5.0	0.32%	8.3	0.50%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.626e-01	1.0000	78.0	4.94%	94.1	5.70%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.580e-01	1.0000	29.0	1.84%	38.6	2.34%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.549e-01	1.0000	212.0	13.42%	242.5	14.69%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.534e-01	1.0000	338.0	21.39%	378.5	22.92%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.513e-01	1.0000	66.0	4.18%	81.9	4.96%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.499e-01	1.0000	115.0	7.28%	136.2	8.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.485e-01	1.0000	7.0	0.44%	11.4	0.69%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.442e-01	1.0000	103.0	6.52%	123.6	7.49%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.431e-01	1.0000	1.0	0.06%	2.1	0.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.431e-01	1.0000	1.0	0.06%	2.8	0.17%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.431e-01	1.0000	1.0	0.06%	2.1	0.13%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.431e-01	1.0000	1.0	0.06%	2.3	0.14%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.428e-01	1.0000	56.0	3.54%	70.1	4.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.409e-01	1.0000	13.0	0.82%	19.2	1.16%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.350e-01	1.0000	30.0	1.90%	40.8	2.47%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.334e-01	1.0000	35.0	2.22%	46.4	2.81%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.276e-01	1.0000	2.0	0.13%	4.6	0.28%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.267e-01	1.0000	137.0	8.67%	162.5	9.84%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.199e-01	1.0000	32.0	2.03%	43.3	2.62%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.172e-01	1.0000	54.0	3.42%	69.8	4.23%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.143e-01	1.0000	47.0	2.97%	61.2	3.71%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.143e-01	1.0000	53.0	3.35%	69.0	4.18%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.106e-01	1.0000	162.0	10.25%	191.1	11.57%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.078e-01	1.0000	10.0	0.63%	16.0	0.97%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.039e-01	1.0000	7.0	0.44%	12.5	0.76%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.801e-02	1.0000	19.0	1.20%	28.5	1.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-9.682e-02	1.0000	27.0	1.71%	38.7	2.35%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.277e-02	1.0000	22.0	1.39%	32.9	2.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-8.841e-02	1.0000	1539.0	97.41%	1619.3	98.07%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.824e-02	1.0000	6.0	0.38%	12.0	0.72%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-8.751e-02	1.0000	14.0	0.89%	22.4	1.36%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.430e-02	1.0000	33.0	2.09%	46.0	2.79%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.697e-02	1.0000	31.0	1.96%	44.3	2.68%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-7.238e-02	1.0000	2.0	0.13%	5.9	0.36%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.238e-02	1.0000	2.0	0.13%	5.6	0.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.192e-02	1.0000	12.0	0.76%	20.6	1.25%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.048e-02	1.0000	1.0	0.06%	3.4	0.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.048e-02	1.0000	1.0	0.06%	3.9	0.24%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.699e-02	1.0000	163.0	10.32%	197.2	11.94%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.078e-02	1.0000	89.0	5.63%	114.2	6.92%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-6.001e-02	1.0000	1504.0	95.19%	1589.4	96.26%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.275e-02	1.0000	28.0	1.77%	42.3	2.56%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.700e-02	1.0000	5.0	0.32%	11.1	0.67%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-4.700e-02	1.0000	1466.0	92.78%	1555.6	94.21%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.616e-02	1.0000	102.0	6.46%	131.3	7.95%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.204e-02	1.0000	146.0	9.24%	182.7	11.06%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-4.036e-02	1.0000	24.0	1.52%	38.6	2.34%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-3.653e-02	1.0000	26.0	1.65%	41.2	2.50%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.619e-02	1.0000	33.0	2.09%	50.1	3.03%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.598e-02	1.0000	54.0	3.42%	76.5	4.63%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.442e-02	1.0000	22.0	1.39%	36.6	2.22%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.817e-02	1.0000	1277.0	80.82%	1376.2	83.35%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.785e-02	1.0000	48.0	3.04%	70.8	4.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.653e-02	1.0000	39.0	2.47%	59.4	3.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.401e-02	1.0000	21.0	1.33%	36.6	2.22%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.332e-02	1.0000	18.0	1.14%	32.8	1.98%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.318e-02	1.0000	3.0	0.19%	9.2	0.56%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.157e-02	1.0000	4.0	0.25%	11.5	0.70%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.098e-02	1.0000	193.0	12.22%	241.6	14.63%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.022e-02	1.0000	28.0	1.77%	46.4	2.81%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.947e-02	1.0000	53.0	3.35%	78.1	4.73%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.788e-02	1.0000	1.0	0.06%	5.1	0.31%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.407e-02	1.0000	1502.0	95.06%	1594.9	96.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.124e-03	1.0000	62.0	3.92%	93.5	5.66%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.517e-03	1.0000	53.0	3.35%	84.6	5.12%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.008e-03	1.0000	55.0	3.48%	87.3	5.29%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.732e-03	1.0000	73.0	4.62%	110.1	6.67%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.677e-03	1.0000	3.0	0.19%	13.7	0.83%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.169e-03	1.0000	2.0	0.13%	12.1	0.73%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.460e-04	1.0000	123.0	7.78%	182.4	11.05%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.12%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-0.000e+00	1.0000	0.0	0.00%	2.7	0.16%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.4	0.15%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.1	0.07%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.1	0.07%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.05%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.05%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1580.0	100.00%	1651.2	100.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%