Information for 1-CCTCNGCCTCCC (Motif 1)


Reverse Opposite:

p-value:1e-26
log p-value:-6.120e+01
Information Content per bp:1.660
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif15.97%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets37.3 +/- 18.7bp
Average Position of motif in Background37.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCTCNGCCTCCC
GGGGCCGAGGCCTG--

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTCNGCCTCCC
GCTCGGSCTC--

ADR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCTCNGCCTCCC
------ACCCCN

ADR1(MacIsaac)/Yeast

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCTCNGCCTCCC
------ACCCCN

ZNF263/MA0528.1/Jaspar

Match Rank:5
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CCTCNGCCTCCC--
TCCTCCTCCCCCTCCTCCTCC

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTCNGCCTCCC-
TGCCTGCGYCMCCTT

CRZ1(MacIsaac)/Yeast

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTCNGCCTCCC
---CAGCCAC--

GCR2/MA0305.1/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CCTCNGCCTCCC
-----GCTTCCT

GCR2(MacIsaac)/Yeast

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCTCNGCCTCCC
-----GCTTCCN

SP1/MA0079.3/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTCNGCCTCCC
GCCCCGCCCCC-