Information for 7-CGGTTCCC (Motif 13)


Reverse Opposite:

p-value:1e-10
log p-value:-2.530e+01
Information Content per bp:1.786
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets39.7 +/- 20.2bp
Average Position of motif in Background31.9 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1/MA0349.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CGGTTCCC
CGGTTCG-

OPI1(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CGGTTCCC
CGGTTCG-

Su(H)/MA0085.1/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CGGTTCCC----
ATCTCGGTTCCCACAN

Rel/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CGGTTCCC-
NGGGATTCCCC

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CGGTTCCC
TKCTGTTCCA

TBS1/MA0404.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CGGTTCCC
CGGATCCG

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGGTTCCC---
--GTTCCCACG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGTTCCC---
-HTTTCCCASG

Ik-1

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTCCC----
GGTATTCCCAANN

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGGTTCCC------
GGGTGTGCCCAAAAGG