Information for 13-AAATTTCTAT (Motif 18)


Reverse Opposite:

p-value:1e-7
log p-value:-1.758e+01
Information Content per bp:1.697
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.10%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets40.8 +/- 20.2bp
Average Position of motif in Background34.9 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CCA1/MA0972.1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AAATTTCTAT
AAATATCT--

LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AAATTTCTAT
ADAAATATCT--

cad/dmmpmm(Down)/fly

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAATTTCTAT
AAATTTTT--

SUM1/MA0398.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTCTAT
AAAAATTTT---

sd/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAATTTCTAT-
CAAATTTCATTT

br-Z2/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAATTTCTAT
---TTACTA-

sd/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AAATTTCTAT-
TCGAATTTCNTTG

AHL12/MA0932.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAATTTCTAT
AATTAATT--

Ubx/dmmpmm(Down)/fly

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAATTTCTAT---
-AATTATTATTTA

br-Z1/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAATTTCTAT-
--ATTTGTATT