Information for 17-GGCAGGAGGG (Motif 21)


Reverse Opposite:

p-value:1e-3
log p-value:-8.800e+00
Information Content per bp:1.731
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets40.8 +/- 19.2bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F6/MA0471.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGAGGG
GGGCGGGAAGG

E2F4/MA0470.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGAGGG
GGGCGGGAAGG

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GGCAGGAGGG-
--CAGGTGAGG

SeqBias: polyC-repeat

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCAGGAGGG
GGGGGGGGGG

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCAGGAGGG
NNCAGGTGNN

PL0002.1_hlh-2::hlh-3/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGAGGG---
NATNAGCAGGTGTTNNN

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGCAGGAGGG
TGCAGGNA--

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCAGGAGGG--
-GGGGGCGGGGC

UGA3/MA0410.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGAGGG
CGGCGGGA---

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCAGGAGGG
GGCGGGAARN