Information for 2-GGGACTACAGGC (Motif 3)


Reverse Opposite:

p-value:1e-18
log p-value:-4.202e+01
Information Content per bp:1.387
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif10.07%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets36.4 +/- 18.2bp
Average Position of motif in Background34.6 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ARALYDRAFT_496250/MA1096.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGGACTACAGGC
GGGACCAC----

TCP4/MA1035.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGACTACAGGC
GGGACCAC----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGGACTACAGGC
-AAACCACAGC-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGACTACAGGC
NAAACCACAG--

TCP5/MA1067.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGACTACAGGC
GGGACCAC----

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGACTACAGGC
NWAACCACADNN

MATALPHA2/MA0328.2/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGGACTACAGGC
---ATTACACG-

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGGACTACAGGC
-AAACCACAGAN

MET28/MA0332.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGGACTACAGGC
----CCACAG--

MET28(MacIsaac)/Yeast

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGGACTACAGGC
----CCACAG--