Information for 3-GARAATBGCTTR (Motif 4)


Reverse Opposite:

p-value:1e-16
log p-value:-3.775e+01
Information Content per bp:1.572
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.60%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets39.3 +/- 16.6bp
Average Position of motif in Background21.8 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GARAATBGCTTR---
-AAAATTGTTATGAA

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GARAATBGCTTR-
GAAAAAATTGCAAGG

cad/dmmpmm(Down)/fly

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GARAATBGCTTR
AAAAATTT----

SUM1/MA0398.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GARAATBGCTTR
AAAAATTTT---

PB0175.1_Sox4_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GARAATBGCTTR---
GGAAAAATTGTTAGGAA

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GARAATBGCTTR
AATGAACAATGGAATT

MEF2C/MA0497.1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GARAATBGCTTR
ATGCTAAAAATAGAA--

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GARAATBGCTTR
RAACAATGGN---

SFP1/MA0378.1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GARAATBGCTTR----
CNGNAGAAAATTTTTTNNNNT

prd-HD/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GARAATBGCTTR--
GATAATCGATTANC