Information for 4-WGYACTTWGAGA (Motif 5)


Reverse Opposite:

p-value:1e-16
log p-value:-3.731e+01
Information Content per bp:1.614
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets40.9 +/- 20.0bp
Average Position of motif in Background43.3 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pan/dmmpmm(Papatsenko)/fly

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:WGYACTTWGAGA
----CTTTGAT-

Bcl6/MA0463.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:WGYACTTWGAGA---
-TTTCCTAGAAAGCA

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:WGYACTTWGAGA
-GCACTTAA---

PH0117.1_Nkx3-1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----WGYACTTWGAGA
TACTAAGTACTTAAATG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-WGYACTTWGAGA
AAGCACTTAA---

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----WGYACTTWGAGA-
CATAACCACTTAACAAC

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:WGYACTTWGAGA
ACCACTTAA---

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----WGYACTTWGAGA
CNTTAAGTACTTAANG-

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--WGYACTTWGAGA--
NNNATTCCTCGAAAGN

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------WGYACTTWGAGA
ACTCCAAGTACTTGGAA-