Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 864)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 785)	% of Background Sequences with Motif
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-4	-1.138e+01	0.0044	116.0	13.43%	55.1	7.02%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.128e+01	0.0044	84.0	9.72%	34.9	4.44%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-4	-9.754e+00	0.0075	15.0	1.74%	0.5	0.07%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-3	-8.243e+00	0.0255	116.0	13.43%	63.8	8.11%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-7.793e+00	0.0319	12.0	1.39%	0.0	0.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-7.382e+00	0.0402	26.0	3.01%	6.5	0.83%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-7.359e+00	0.0402	152.0	17.59%	93.9	11.94%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.893e+00	0.0491	49.0	5.67%	20.1	2.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-5.989e+00	0.1077	21.0	2.43%	5.4	0.69%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-5.766e+00	0.1213	125.0	14.47%	78.9	10.03%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-5.685e+00	0.1213	31.0	3.59%	11.1	1.42%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-2	-5.558e+00	0.1244	61.0	7.06%	31.8	4.05%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.513e+00	0.1244	18.0	2.08%	4.8	0.61%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.304e+00	0.1374	11.0	1.27%	1.3	0.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.186e+00	0.1443	8.0	0.93%	0.6	0.07%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-4.986e+00	0.1653	40.0	4.63%	18.6	2.36%
SeqBias: TA-repeat	TATATATATA	1e-2	-4.740e+00	0.1989	209.0	24.19%	151.7	19.30%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-4.693e+00	0.1989	42.0	4.86%	20.5	2.61%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-4.536e+00	0.2183	7.0	0.81%	0.4	0.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-4.436e+00	0.2291	44.0	5.09%	22.7	2.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.405e+00	0.2291	29.0	3.36%	12.9	1.64%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.312e+00	0.2359	52.0	6.02%	28.9	3.67%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-4.188e+00	0.2554	22.0	2.55%	8.0	1.02%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-4.142e+00	0.2554	15.0	1.74%	4.2	0.54%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.142e+00	0.2554	15.0	1.74%	5.0	0.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.823e+00	0.3255	21.0	2.43%	8.7	1.11%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.754e+00	0.3357	27.0	3.12%	12.8	1.63%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.737e+00	0.3357	51.0	5.90%	29.2	3.71%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.707e+00	0.3357	14.0	1.62%	4.7	0.59%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.707e+00	0.3357	14.0	1.62%	4.1	0.53%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.654e+00	0.3357	34.0	3.94%	17.8	2.27%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.612e+00	0.3357	8.0	0.93%	1.1	0.14%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.612e+00	0.3357	8.0	0.93%	2.0	0.25%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-3.586e+00	0.3357	38.0	4.40%	20.4	2.59%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.454e+00	0.3497	101.0	11.69%	69.8	8.88%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.452e+00	0.3497	43.0	4.98%	24.4	3.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.284e+00	0.3919	13.0	1.50%	4.7	0.60%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.272e+00	0.3919	34.0	3.94%	18.4	2.35%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-3.237e+00	0.3919	5.0	0.58%	0.0	0.00%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.067e+00	0.4396	7.0	0.81%	1.3	0.17%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.067e+00	0.4396	7.0	0.81%	1.8	0.23%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.966e+00	0.4745	17.0	1.97%	7.1	0.90%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.923e+00	0.4841	34.0	3.94%	19.6	2.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.910e+00	0.4841	42.0	4.86%	25.7	3.27%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.876e+00	0.4849	12.0	1.39%	4.2	0.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.856e+00	0.4849	31.0	3.59%	17.5	2.23%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.851e+00	0.4849	24.0	2.78%	12.1	1.54%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.818e+00	0.4849	52.0	6.02%	33.7	4.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.795e+00	0.4849	57.0	6.60%	37.6	4.78%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.652e+00	0.5460	46.0	5.32%	29.2	3.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.648e+00	0.5460	19.0	2.20%	9.9	1.26%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.644e+00	0.5460	241.0	27.89%	193.5	24.63%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.632e+00	0.5460	26.0	3.01%	14.9	1.90%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.617e+00	0.5460	8.0	0.93%	2.0	0.26%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.617e+00	0.5460	8.0	0.93%	3.0	0.38%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.589e+00	0.5460	4.0	0.46%	0.0	0.00%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.589e+00	0.5460	4.0	0.46%	0.4	0.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.575e+00	0.5460	52.0	6.02%	34.2	4.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.572e+00	0.5460	23.0	2.66%	12.9	1.64%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.538e+00	0.5460	27.0	3.12%	15.2	1.93%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-2.537e+00	0.5460	132.0	15.28%	100.1	12.73%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.458e+00	0.5460	14.0	1.62%	6.5	0.83%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-2.455e+00	0.5460	45.0	5.21%	29.0	3.69%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.381e+00	0.5593	33.0	3.82%	20.3	2.58%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-2.371e+00	0.5593	29.0	3.36%	17.4	2.21%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.317e+00	0.5777	63.0	7.29%	44.4	5.66%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.195e+00	0.6432	36.0	4.17%	24.0	3.05%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.162e+00	0.6551	7.0	0.81%	2.3	0.30%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.064e+00	0.7123	17.0	1.97%	9.1	1.16%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.060e+00	0.7123	54.0	6.25%	38.2	4.86%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.057e+00	0.7123	25.0	2.89%	15.8	2.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.017e+00	0.7123	5.0	0.58%	1.1	0.14%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.017e+00	0.7123	5.0	0.58%	1.2	0.15%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.017e+00	0.7123	5.0	0.58%	1.1	0.14%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.017e+00	0.7123	5.0	0.58%	1.2	0.15%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.999e+00	0.7123	35.0	4.05%	23.4	2.98%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.997e+00	0.7123	14.0	1.62%	7.3	0.93%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.943e+00	0.7123	11.0	1.27%	5.3	0.68%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.941e+00	0.7123	3.0	0.35%	0.0	0.00%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.941e+00	0.7123	3.0	0.35%	0.0	0.00%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.941e+00	0.7123	3.0	0.35%	1.0	0.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.922e+00	0.7123	8.0	0.93%	3.2	0.40%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.922e+00	0.7123	8.0	0.93%	3.7	0.48%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.922e+00	0.7123	8.0	0.93%	4.0	0.51%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.922e+00	0.7123	8.0	0.93%	3.5	0.44%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.887e+00	0.7123	15.0	1.74%	8.1	1.04%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.887e+00	0.7123	15.0	1.74%	8.9	1.13%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.868e+00	0.7123	28.0	3.24%	19.0	2.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.750e+00	0.7388	9.0	1.04%	4.1	0.53%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.750e+00	0.7388	9.0	1.04%	4.2	0.54%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.750e+00	0.7388	9.0	1.04%	4.3	0.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.728e+00	0.7472	6.0	0.69%	2.3	0.29%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.728e+00	0.7472	135.0	15.62%	109.2	13.89%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.718e+00	0.7472	31.0	3.59%	21.7	2.76%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.712e+00	0.7472	17.0	1.97%	10.5	1.34%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.705e+00	0.7472	13.0	1.50%	7.1	0.90%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.705e+00	0.7472	13.0	1.50%	7.8	0.99%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.705e+00	0.7472	13.0	1.50%	7.3	0.92%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.640e+00	0.7583	18.0	2.08%	11.3	1.44%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.620e+00	0.7659	10.0	1.16%	5.5	0.70%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.615e+00	0.7659	14.0	1.62%	9.0	1.14%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.615e+00	0.7659	14.0	1.62%	8.1	1.03%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.615e+00	0.7659	14.0	1.62%	8.2	1.05%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.576e+00	0.7693	19.0	2.20%	12.7	1.62%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.545e+00	0.7860	7.0	0.81%	3.5	0.44%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.523e+00	0.7959	25.0	2.89%	18.0	2.29%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.522e+00	0.7959	405.0	46.88%	352.8	44.90%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.521e+00	0.7959	4.0	0.46%	1.2	0.16%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.498e+00	0.7959	69.0	7.99%	54.7	6.97%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.320e+00	0.9402	5.0	0.58%	2.9	0.37%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.319e+00	0.9402	9.0	1.04%	5.2	0.67%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.303e+00	0.9402	25.0	2.89%	19.0	2.41%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.301e+00	0.9402	14.0	1.62%	9.3	1.19%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.293e+00	0.9402	2.0	0.23%	0.0	0.00%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.208e+00	0.9476	28.0	3.24%	21.5	2.73%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.208e+00	0.9476	28.0	3.24%	21.2	2.69%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.202e+00	0.9476	16.0	1.85%	11.8	1.50%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.199e+00	0.9476	22.0	2.55%	16.5	2.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.195e+00	0.9476	6.0	0.69%	4.0	0.51%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.195e+00	0.9476	6.0	0.69%	3.6	0.46%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.195e+00	0.9476	6.0	0.69%	4.0	0.50%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.195e+00	0.9476	6.0	0.69%	3.7	0.47%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.192e+00	0.9476	167.0	19.33%	143.8	18.30%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.136e+00	0.9555	24.0	2.78%	19.0	2.41%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.090e+00	0.9933	19.0	2.20%	14.0	1.79%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.083e+00	0.9933	26.0	3.01%	20.8	2.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.080e+00	0.9933	13.0	1.50%	9.5	1.21%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.080e+00	0.9933	13.0	1.50%	9.2	1.18%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.059e+00	0.9938	20.0	2.31%	15.8	2.01%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.053e+00	0.9938	3.0	0.35%	1.7	0.21%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.053e+00	0.9938	3.0	0.35%	1.6	0.20%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.053e+00	0.9938	3.0	0.35%	1.8	0.23%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.053e+00	0.9938	3.0	0.35%	1.3	0.17%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.053e+00	0.9938	3.0	0.35%	1.5	0.19%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.042e+00	0.9938	8.0	0.93%	5.6	0.72%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.041e+00	0.9938	14.0	1.62%	10.8	1.38%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.015e+00	0.9938	29.0	3.36%	23.5	2.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.895e-01	0.9991	9.0	1.04%	6.2	0.79%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.751e-01	1.0000	16.0	1.85%	12.2	1.55%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-9.590e-01	1.0000	828.0	95.83%	749.2	95.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.484e-01	1.0000	58.0	6.71%	49.1	6.24%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.466e-01	1.0000	10.0	1.16%	7.6	0.97%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.466e-01	1.0000	10.0	1.16%	7.9	1.00%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.466e-01	1.0000	10.0	1.16%	7.2	0.91%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-9.430e-01	1.0000	4.0	0.46%	2.5	0.32%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-9.237e-01	1.0000	34.0	3.94%	28.6	3.64%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.193e-01	1.0000	26.0	3.01%	21.7	2.76%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-9.104e-01	1.0000	11.0	1.27%	8.9	1.14%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-9.015e-01	1.0000	271.0	31.37%	241.6	30.74%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.908e-01	1.0000	54.0	6.25%	46.8	5.95%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.791e-01	1.0000	12.0	1.39%	9.8	1.24%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-8.757e-01	1.0000	5.0	0.58%	3.8	0.49%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-8.757e-01	1.0000	5.0	0.58%	3.8	0.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.686e-01	1.0000	56.0	6.48%	48.3	6.14%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-8.518e-01	1.0000	13.0	1.50%	10.2	1.30%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.280e-01	1.0000	6.0	0.69%	4.9	0.62%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.275e-01	1.0000	14.0	1.62%	11.3	1.44%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.057e-01	1.0000	15.0	1.74%	12.4	1.58%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.915e-01	1.0000	7.0	0.81%	5.3	0.68%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-7.897e-01	1.0000	241.0	27.89%	216.5	27.55%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.630e-01	1.0000	27.0	3.12%	23.1	2.93%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.621e-01	1.0000	8.0	0.93%	6.7	0.85%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-7.621e-01	1.0000	8.0	0.93%	6.3	0.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.621e-01	1.0000	8.0	0.93%	6.2	0.80%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.375e-01	1.0000	9.0	1.04%	7.2	0.92%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-7.375e-01	1.0000	9.0	1.04%	7.1	0.90%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.375e-01	1.0000	9.0	1.04%	7.0	0.90%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-7.360e-01	1.0000	839.0	97.11%	761.2	96.87%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.359e-01	1.0000	19.0	2.20%	16.7	2.12%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.216e-01	1.0000	20.0	2.31%	17.3	2.20%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-7.093e-01	1.0000	53.0	6.13%	47.1	6.00%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.813e-01	1.0000	12.0	1.39%	10.3	1.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.756e-01	1.0000	35.0	4.05%	31.0	3.95%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.727e-01	1.0000	24.0	2.78%	21.7	2.76%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.664e-01	1.0000	13.0	1.50%	11.3	1.43%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.579e-01	1.0000	37.0	4.28%	33.4	4.25%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.521e-01	1.0000	26.0	3.01%	23.9	3.04%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.466e-01	1.0000	50.0	5.79%	45.0	5.73%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.464e-01	1.0000	1.0	0.12%	0.7	0.09%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.464e-01	1.0000	1.0	0.12%	0.4	0.05%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.4	0.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.8	0.10%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.464e-01	1.0000	1.0	0.12%	0.8	0.10%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.5	0.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.464e-01	1.0000	1.0	0.12%	0.5	0.06%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.464e-01	1.0000	1.0	0.12%	0.0	0.00%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.464e-01	1.0000	1.0	0.12%	0.5	0.07%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.404e-01	1.0000	15.0	1.74%	13.0	1.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.238e-01	1.0000	2.0	0.23%	1.6	0.21%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.238e-01	1.0000	2.0	0.23%	1.5	0.19%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.238e-01	1.0000	2.0	0.23%	1.5	0.19%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.072e-01	1.0000	3.0	0.35%	2.7	0.34%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-5.947e-01	1.0000	721.0	83.45%	656.9	83.59%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.935e-01	1.0000	4.0	0.46%	3.3	0.42%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-5.818e-01	1.0000	5.0	0.58%	4.8	0.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.818e-01	1.0000	5.0	0.58%	4.1	0.53%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.618e-01	1.0000	7.0	0.81%	6.5	0.82%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.531e-01	1.0000	8.0	0.93%	7.8	0.99%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.511e-01	1.0000	25.0	2.89%	23.9	3.05%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.450e-01	1.0000	9.0	1.04%	8.3	1.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.450e-01	1.0000	9.0	1.04%	8.1	1.03%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.374e-01	1.0000	10.0	1.16%	9.8	1.24%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.316e-01	1.0000	28.0	3.24%	26.1	3.32%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.302e-01	1.0000	11.0	1.27%	10.2	1.30%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-5.298e-01	1.0000	43.0	4.98%	40.8	5.19%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.234e-01	1.0000	12.0	1.39%	11.9	1.51%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.992e-01	1.0000	16.0	1.85%	15.4	1.95%
Tal1	CATCTG	1e0	-4.742e-01	1.0000	39.0	4.51%	37.9	4.82%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.697e-01	1.0000	40.0	4.63%	38.1	4.85%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.687e-01	1.0000	56.0	6.48%	53.7	6.83%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.612e-01	1.0000	42.0	4.86%	40.8	5.19%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.455e-01	1.0000	77.0	8.91%	73.5	9.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.304e-01	1.0000	110.0	12.73%	104.9	13.34%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.302e-01	1.0000	50.0	5.79%	48.2	6.13%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-3.987e-01	1.0000	9.0	1.04%	9.2	1.17%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.983e-01	1.0000	12.0	1.39%	12.2	1.55%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.974e-01	1.0000	8.0	0.93%	8.2	1.04%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.946e-01	1.0000	15.0	1.74%	15.0	1.91%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.909e-01	1.0000	6.0	0.69%	6.1	0.77%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.843e-01	1.0000	5.0	0.58%	5.6	0.71%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.737e-01	1.0000	4.0	0.46%	4.2	0.53%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.737e-01	1.0000	4.0	0.46%	4.8	0.61%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.562e-01	1.0000	3.0	0.35%	3.1	0.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.562e-01	1.0000	3.0	0.35%	3.5	0.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.562e-01	1.0000	3.0	0.35%	3.4	0.43%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.562e-01	1.0000	3.0	0.35%	3.4	0.44%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.519e-01	1.0000	58.0	6.71%	57.6	7.33%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.501e-01	1.0000	36.0	4.17%	36.2	4.61%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.246e-01	1.0000	2.0	0.23%	2.1	0.26%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-3.228e-01	1.0000	568.0	65.74%	527.0	67.05%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.191e-01	1.0000	51.0	5.90%	51.4	6.54%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.077e-01	1.0000	20.0	2.31%	21.8	2.78%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.055e-01	1.0000	25.0	2.89%	26.4	3.36%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.042e-01	1.0000	14.0	1.62%	15.1	1.93%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.933e-01	1.0000	10.0	1.16%	11.1	1.41%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.933e-01	1.0000	10.0	1.16%	11.7	1.49%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.890e-01	1.0000	40.0	4.63%	41.1	5.23%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.885e-01	1.0000	9.0	1.04%	10.3	1.31%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.850e-01	1.0000	43.0	4.98%	44.3	5.64%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.810e-01	1.0000	46.0	5.32%	47.6	6.06%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.646e-01	1.0000	6.0	0.69%	7.3	0.93%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.646e-01	1.0000	6.0	0.69%	7.6	0.96%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.568e-01	1.0000	1.0	0.12%	1.3	0.16%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.568e-01	1.0000	1.0	0.12%	1.6	0.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.568e-01	1.0000	1.0	0.12%	1.9	0.24%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.568e-01	1.0000	1.0	0.12%	1.2	0.16%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.568e-01	1.0000	1.0	0.12%	1.3	0.16%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.514e-01	1.0000	5.0	0.58%	6.2	0.79%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.478e-01	1.0000	29.0	3.36%	31.8	4.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.474e-01	1.0000	25.0	2.89%	27.7	3.53%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.456e-01	1.0000	36.0	4.17%	38.7	4.92%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.425e-01	1.0000	41.0	4.75%	43.2	5.49%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.390e-01	1.0000	17.0	1.97%	19.2	2.44%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-2.337e-01	1.0000	4.0	0.46%	5.6	0.71%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.091e-01	1.0000	3.0	0.35%	4.3	0.54%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.091e-01	1.0000	3.0	0.35%	4.1	0.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.066e-01	1.0000	143.0	16.55%	142.3	18.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.979e-01	1.0000	54.0	6.25%	57.3	7.29%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.977e-01	1.0000	24.0	2.78%	27.4	3.49%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.893e-01	1.0000	19.0	2.20%	22.9	2.91%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.779e-01	1.0000	15.0	1.74%	18.1	2.30%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.769e-01	1.0000	6.0	0.69%	8.1	1.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.727e-01	1.0000	2.0	0.23%	3.6	0.46%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.694e-01	1.0000	49.0	5.67%	53.5	6.81%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.653e-01	1.0000	31.0	3.59%	35.9	4.57%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.648e-01	1.0000	12.0	1.39%	15.9	2.02%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.646e-01	1.0000	64.0	7.41%	68.7	8.75%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.635e-01	1.0000	29.0	3.36%	33.5	4.26%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.625e-01	1.0000	5.0	0.58%	7.0	0.90%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.465e-01	1.0000	19.0	2.20%	23.3	2.96%
SeqBias: CA-repeat	CACACACACA	1e0	-1.344e-01	1.0000	179.0	20.72%	180.0	22.90%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.277e-01	1.0000	7.0	0.81%	10.2	1.29%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.250e-01	1.0000	13.0	1.50%	17.3	2.20%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.219e-01	1.0000	3.0	0.35%	5.8	0.73%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.219e-01	1.0000	3.0	0.35%	5.1	0.64%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.219e-01	1.0000	3.0	0.35%	5.2	0.66%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.200e-01	1.0000	12.0	1.39%	16.1	2.05%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.174e-01	1.0000	21.0	2.43%	26.6	3.39%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.145e-01	1.0000	11.0	1.27%	15.9	2.03%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.139e-01	1.0000	1.0	0.12%	2.8	0.36%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.139e-01	1.0000	1.0	0.12%	2.8	0.35%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.139e-01	1.0000	1.0	0.12%	2.5	0.32%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.123e-01	1.0000	36.0	4.17%	42.8	5.44%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.115e-01	1.0000	35.0	4.05%	42.0	5.34%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.095e-01	1.0000	33.0	3.82%	39.2	4.99%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.094e-01	1.0000	18.0	2.08%	23.2	2.95%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.094e-01	1.0000	18.0	2.08%	23.1	2.94%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.083e-01	1.0000	10.0	1.16%	14.2	1.80%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.063e-01	1.0000	17.0	1.97%	22.9	2.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.048e-01	1.0000	29.0	3.36%	35.5	4.52%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.030e-01	1.0000	16.0	1.85%	21.0	2.67%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.264e-02	1.0000	38.0	4.40%	45.2	5.76%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-9.222e-02	1.0000	2.0	0.23%	4.6	0.59%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.222e-02	1.0000	2.0	0.23%	4.7	0.60%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-9.222e-02	1.0000	2.0	0.23%	4.1	0.52%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.222e-02	1.0000	2.0	0.23%	4.5	0.57%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.027e-02	1.0000	21.0	2.43%	27.5	3.50%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.627e-02	1.0000	75.0	8.68%	83.9	10.68%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.534e-02	1.0000	7.0	0.81%	11.4	1.46%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-8.250e-02	1.0000	102.0	11.81%	110.1	14.01%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.131e-02	1.0000	11.0	1.27%	16.4	2.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.034e-02	1.0000	111.0	12.85%	119.6	15.22%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-7.996e-02	1.0000	765.0	88.54%	711.8	90.58%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.652e-02	1.0000	20.0	2.31%	27.3	3.47%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.646e-02	1.0000	30.0	3.47%	38.5	4.90%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.325e-02	1.0000	4.0	0.46%	8.8	1.12%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.192e-02	1.0000	21.0	2.43%	29.1	3.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.738e-02	1.0000	9.0	1.04%	15.1	1.92%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.331e-02	1.0000	18.0	2.08%	27.1	3.45%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.165e-02	1.0000	4.0	0.46%	9.1	1.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.015e-02	1.0000	29.0	3.36%	40.4	5.14%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.911e-02	1.0000	49.0	5.67%	62.4	7.93%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.763e-02	1.0000	8.0	0.93%	15.2	1.94%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.458e-02	1.0000	1.0	0.12%	4.9	0.62%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.259e-02	1.0000	3.0	0.35%	8.1	1.03%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.259e-02	1.0000	3.0	0.35%	8.4	1.07%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.100e-02	1.0000	9.0	1.04%	17.0	2.17%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.913e-02	1.0000	6.0	0.69%	13.9	1.77%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.735e-02	1.0000	29.0	3.36%	42.1	5.35%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.639e-02	1.0000	22.0	2.55%	34.6	4.40%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.437e-02	1.0000	20.0	2.31%	33.0	4.20%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.372e-02	1.0000	9.0	1.04%	18.4	2.34%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.313e-02	1.0000	70.0	8.10%	88.3	11.23%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.282e-02	1.0000	817.0	94.56%	759.5	96.65%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.159e-02	1.0000	1.0	0.12%	5.4	0.68%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.159e-02	1.0000	1.0	0.12%	5.8	0.74%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.145e-02	1.0000	8.0	0.93%	17.7	2.26%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.024e-02	1.0000	16.0	1.85%	28.6	3.64%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-9.860e-03	1.0000	24.0	2.78%	38.6	4.92%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-9.674e-03	1.0000	52.0	6.02%	70.2	8.94%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.248e-03	1.0000	7.0	0.81%	16.3	2.07%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.664e-03	1.0000	18.0	2.08%	31.8	4.04%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.922e-03	1.0000	3.0	0.35%	10.8	1.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.698e-03	1.0000	53.0	6.13%	74.5	9.48%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.592e-03	1.0000	1.0	0.12%	7.8	0.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.001e-03	1.0000	29.0	3.36%	51.4	6.55%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-9.580e-04	1.0000	54.0	6.25%	81.8	10.41%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.550e-04	1.0000	52.0	6.02%	80.3	10.22%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.860e-04	1.0000	52.0	6.02%	81.8	10.41%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.390e-04	1.0000	15.0	1.74%	35.4	4.50%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.820e-04	1.0000	46.0	5.32%	77.0	9.80%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.610e-04	1.0000	49.0	5.67%	81.1	10.32%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	1.0	0.12%	22.0	2.80%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.3	0.29%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	0.0	0.00%	3.3	0.42%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	3.4	0.43%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	864.0	100.00%	785.9	100.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.11%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.06%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.07%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.06%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	0.000e+00	1.0000	0.0	0.00%	1.6	0.20%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	6.8	0.87%