Information for 4-ACTTTGGGAGCC (Motif 10)


Reverse Opposite:

p-value:1e-13
log p-value:-3.002e+01
Information Content per bp:1.797
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif5.94%
Number of Background Sequences with motif20.4
Percentage of Background Sequences with motif1.26%
Average Position of motif in Targets41.4 +/- 21.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR1/MA0304.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ACTTTGGGAGCC
----TGGAAGCC

Su(H)/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ACTTTGGGAGCC
---ATGAGAA--

GCR1(MacIsaac)/Yeast

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGGAGCC-
----TGGAAGCCC

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACTTTGGGAGCC
-----CGGAGC-

PB0162.1_Sfpi1_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACTTTGGGAGCC
CAAATTCCGGAACC

Su(H)/MA0085.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACTTTGGGAGCC-----
-CTGTGGGAAACGAGAT

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGGAGCC---
----TGGGAGACAAG

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ACTTTGGGAGCC
-NNTTGGCANN-

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTTTGGGAGCC--
NAATTTTACGAGNTNN

GTS1(MacIsaac)/Yeast

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ACTTTGGGAGCC
---TTGGTA---