Information for 10-GCTCACGC (Motif 12)


Reverse Opposite:

p-value:1e-11
log p-value:-2.633e+01
Information Content per bp:1.824
Number of Target Sequences with motif143.0
Percentage of Target Sequences with motif9.04%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif3.28%
Average Position of motif in Targets36.9 +/- 18.5bp
Average Position of motif in Background35.4 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:GCTCACGC-
---CACGCA

hkb/MA0450.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GCTCACGC---
--TCACGCCCC

EGR2/MA0472.2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCTCACGC-
ACGCCCACGCA

hkb/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCTCACGC----
CNTCACGCCCCC

EGR3/MA0732.1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCTCACGC---
CTACGCCCACGCACT

NRF1/MA0506.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCTCACGC--
TGCGCAGGCGC

EGR4/MA0733.1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTCACGC----
TTACGCCCACGCATTT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTCACGC--
TBGCACGCAA

RTG3/Literature(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTCACGC
GGTCAC--

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTCACGC-----
-HHCACGCGCBTN