Information for 3-AGGAGAATCACT (Motif 8)


Reverse Opposite:

p-value:1e-13
log p-value:-3.214e+01
Information Content per bp:1.444
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif3.79%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets33.1 +/- 16.1bp
Average Position of motif in Background20.1 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/dmmpmm(Noyes)/fly

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGAATCACT
CAAGGATAATCNAA

ttk/MA0460.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGAGAATCACT
AAGGATAAT----

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGGAGAATCACT-
---CAAATCACTG

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGAGAATCACT-
TAATGATGATCACTA

ap/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGGAGAATCACT
----TAATAA--

Rel/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGAGAATCACT
-GGGGAATCCCN

dl/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGAGAATCACT
-GGAAAATCC--

ARG81(MacIsaac)/Yeast

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGAGAATCACT
---NGAGTCAC-

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AGGAGAATCACT
-----AATTATT

ARG81/MA0272.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGGAGAATCACT
---NGAGTCAC-