| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer | 1e-7 | -1.758e+01 | 0.0000 | 268.0 | 16.45% | 165.1 | 9.97% | motif file (matrix) |
pdf |
| 2 |  | PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer | 1e-5 | -1.222e+01 | 0.0010 | 296.0 | 18.17% | 208.9 | 12.61% | motif file (matrix) |
pdf |
| 3 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-4 | -1.115e+01 | 0.0018 | 22.0 | 1.35% | 2.2 | 0.13% | motif file (matrix) |
pdf |
| 4 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-4 | -1.095e+01 | 0.0018 | 42.0 | 2.58% | 13.0 | 0.78% | motif file (matrix) |
pdf |
| 5 |  | ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.036e+01 | 0.0025 | 114.0 | 7.00% | 63.7 | 3.85% | motif file (matrix) |
pdf |
| 6 |  | LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer | 1e-4 | -9.449e+00 | 0.0051 | 121.0 | 7.43% | 71.0 | 4.29% | motif file (matrix) |
pdf |
| 7 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.309e+00 | 0.0051 | 35.0 | 2.15% | 10.9 | 0.66% | motif file (matrix) |
pdf |
| 8 |  | E-box/Arabidopsis-Promoters/Homer | 1e-3 | -8.721e+00 | 0.0079 | 32.0 | 1.96% | 9.2 | 0.56% | motif file (matrix) |
pdf |
| 9 |  | FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-3 | -8.405e+00 | 0.0096 | 89.0 | 5.46% | 49.4 | 2.98% | motif file (matrix) |
pdf |
| 10 |  | Unknown2/Drosophila-Promoters/Homer | 1e-3 | -7.873e+00 | 0.0147 | 91.0 | 5.59% | 52.6 | 3.18% | motif file (matrix) |
pdf |
| 11 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-3 | -7.676e+00 | 0.0163 | 119.0 | 7.31% | 75.3 | 4.55% | motif file (matrix) |
pdf |
| 12 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-3 | -7.568e+00 | 0.0167 | 100.0 | 6.14% | 60.0 | 3.62% | motif file (matrix) |
pdf |
| 13 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.555e+00 | 0.0167 | 127.0 | 7.80% | 82.8 | 5.00% | motif file (matrix) |
pdf |
| 14 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.545e+00 | 0.0167 | 36.0 | 2.21% | 13.5 | 0.82% | motif file (matrix) |
pdf |
| 15 |  | GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-3 | -7.406e+00 | 0.0167 | 177.0 | 10.87% | 125.0 | 7.55% | motif file (matrix) |
pdf |
| 16 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-3 | -7.061e+00 | 0.0207 | 66.0 | 4.05% | 35.3 | 2.13% | motif file (matrix) |
pdf |
| 17 |  | SeqBias: GA-repeat | 1e-3 | -7.023e+00 | 0.0207 | 569.0 | 34.93% | 493.2 | 29.77% | motif file (matrix) |
pdf |
| 18 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.590e+00 | 0.0295 | 24.0 | 1.47% | 7.6 | 0.46% | motif file (matrix) |
pdf |
| 19 |  | SeqBias: TA-repeat | 1e-2 | -6.572e+00 | 0.0295 | 459.0 | 28.18% | 390.2 | 23.55% | motif file (matrix) |
pdf |
| 20 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -6.534e+00 | 0.0295 | 102.0 | 6.26% | 65.8 | 3.97% | motif file (matrix) |
pdf |
| 21 |  | FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -6.434e+00 | 0.0296 | 104.0 | 6.38% | 67.1 | 4.05% | motif file (matrix) |
pdf |
| 22 |  | Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-2 | -5.858e+00 | 0.0502 | 67.0 | 4.11% | 39.7 | 2.39% | motif file (matrix) |
pdf |
| 23 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-2 | -5.852e+00 | 0.0502 | 82.0 | 5.03% | 51.5 | 3.11% | motif file (matrix) |
pdf |
| 24 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-2 | -5.835e+00 | 0.0502 | 125.0 | 7.67% | 87.4 | 5.27% | motif file (matrix) |
pdf |
| 25 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.694e+00 | 0.0521 | 60.0 | 3.68% | 34.7 | 2.10% | motif file (matrix) |
pdf |
| 26 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-2 | -5.662e+00 | 0.0521 | 65.0 | 3.99% | 38.9 | 2.35% | motif file (matrix) |
pdf |
| 27 |  | ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer | 1e-2 | -5.620e+00 | 0.0521 | 8.0 | 0.49% | 0.0 | 0.00% | motif file (matrix) |
pdf |
| 28 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-2 | -5.554e+00 | 0.0535 | 31.0 | 1.90% | 13.5 | 0.82% | motif file (matrix) |
pdf |
| 29 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.354e+00 | 0.0631 | 29.0 | 1.78% | 12.2 | 0.74% | motif file (matrix) |
pdf |
| 30 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-2 | -5.261e+00 | 0.0670 | 330.0 | 20.26% | 277.4 | 16.74% | motif file (matrix) |
pdf |
| 31 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.227e+00 | 0.0670 | 33.0 | 2.03% | 15.3 | 0.92% | motif file (matrix) |
pdf |
| 32 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.027e+00 | 0.0793 | 122.0 | 7.49% | 88.8 | 5.36% | motif file (matrix) |
pdf |
| 33 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.949e+00 | 0.0832 | 56.0 | 3.44% | 33.3 | 2.01% | motif file (matrix) |
pdf |
| 34 |  | Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -4.916e+00 | 0.0834 | 7.0 | 0.43% | 0.0 | 0.00% | motif file (matrix) |
pdf |
| 35 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.771e+00 | 0.0937 | 75.0 | 4.60% | 50.0 | 3.02% | motif file (matrix) |
pdf |
| 36 |  | RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-2 | -4.610e+00 | 0.1070 | 9.0 | 0.55% | 1.0 | 0.06% | motif file (matrix) |
pdf |