| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Unknown4/Drosophila-Promoters/Homer | 1e-4 | -1.050e+01 | 0.0107 | 27.0 | 1.85% | 5.9 | 0.38% | motif file (matrix) |
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| 2 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.055e+00 | 1.0000 | 7.0 | 0.48% | 0.8 | 0.05% | motif file (matrix) |
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| 3 |  | FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -4.927e+00 | 1.0000 | 88.0 | 6.02% | 63.0 | 4.08% | motif file (matrix) |
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| 4 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -4.831e+00 | 1.0000 | 83.0 | 5.68% | 58.8 | 3.81% | motif file (matrix) |
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| 5 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-2 | -4.721e+00 | 1.0000 | 71.0 | 4.86% | 48.4 | 3.13% | motif file (matrix) |
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| 6 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.662e+00 | 1.0000 | 29.0 | 1.98% | 14.5 | 0.94% | motif file (matrix) |
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