Homer Known Motif Enrichment Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/98/TI/)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 3000, Total Background Sequences = 2149
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-95-2.202e+020.0000811.027.03%122.35.69%motif file (matrix) pdf
2Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-83-1.916e+020.0000706.023.53%103.24.80%motif file (matrix) pdf
3Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-77-1.777e+020.0000652.021.73%93.94.37%motif file (matrix) pdf
4Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-67-1.551e+020.0000475.015.83%47.92.23%motif file (matrix) pdf
5Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer1e-46-1.070e+020.0000383.012.77%50.02.32%motif file (matrix) pdf
6Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer1e-43-1.002e+020.0000454.015.13%81.73.80%motif file (matrix) pdf
7OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-30-7.077e+010.0000188.06.27%12.90.60%motif file (matrix) pdf
8Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer1e-28-6.577e+010.0000341.011.37%69.03.21%motif file (matrix) pdf
9Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-23-5.425e+010.0000304.010.13%66.93.11%motif file (matrix) pdf
10Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-21-4.841e+010.0000877.029.23%383.017.82%motif file (matrix) pdf
11Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-19-4.573e+010.0000186.06.20%28.91.34%motif file (matrix) pdf
12Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer1e-18-4.155e+010.0000260.08.67%62.22.90%motif file (matrix) pdf
13Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer1e-15-3.597e+010.0000146.04.87%22.11.03%motif file (matrix) pdf
14TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-14-3.437e+010.0000219.07.30%53.52.49%motif file (matrix) pdf
15DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer1e-14-3.265e+010.0000179.05.97%38.31.78%motif file (matrix) pdf
16Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer1e-13-3.100e+010.0000120.04.00%17.20.80%motif file (matrix) pdf
17Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-13-3.088e+010.0000139.04.63%24.11.12%motif file (matrix) pdf
18Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-12-2.773e+010.0000540.018.00%235.310.95%motif file (matrix) pdf
19SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-11-2.559e+010.0000960.032.00%503.623.43%motif file (matrix) pdf
20TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-11-2.541e+010.0000130.04.33%26.91.25%motif file (matrix) pdf
21Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-10-2.500e+010.0000100.03.33%15.40.72%motif file (matrix) pdf
22Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-10-2.468e+010.0000102.03.40%16.50.77%motif file (matrix) pdf
23FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-9-2.137e+010.0000179.05.97%53.32.48%motif file (matrix) pdf
24Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-8-2.030e+010.0000351.011.70%146.76.83%motif file (matrix) pdf
25BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-8-1.962e+010.000050.01.67%3.90.18%motif file (matrix) pdf
26Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-8-1.926e+010.0000441.014.70%201.29.36%motif file (matrix) pdf
27FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-7-1.831e+010.0000152.05.07%45.22.10%motif file (matrix) pdf
28EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-7-1.822e+010.0000204.06.80%71.83.34%motif file (matrix) pdf
29E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-7-1.807e+010.0000147.04.90%43.92.04%motif file (matrix) pdf
30Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer1e-7-1.800e+010.0000335.011.17%143.96.70%motif file (matrix) pdf
31Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer1e-7-1.738e+010.0000246.08.20%95.34.44%motif file (matrix) pdf
32Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer1e-7-1.737e+010.000086.02.87%17.10.79%motif file (matrix) pdf
33Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-7-1.730e+010.0000169.05.63%55.42.58%motif file (matrix) pdf
34TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-7-1.649e+010.0000156.05.20%50.92.37%motif file (matrix) pdf
35Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-7-1.630e+010.0000234.07.80%91.74.27%motif file (matrix) pdf
36ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-6-1.598e+010.0000276.09.20%115.45.37%motif file (matrix) pdf
37E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer1e-6-1.506e+010.0000105.03.50%28.21.31%motif file (matrix) pdf
38ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer1e-6-1.383e+010.0000156.05.20%55.02.56%motif file (matrix) pdf
39Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-5-1.379e+010.0000122.04.07%38.21.78%motif file (matrix) pdf
40Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-5-1.348e+010.0000127.04.23%41.21.92%motif file (matrix) pdf
41PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer1e-5-1.337e+010.0000347.011.57%164.47.65%motif file (matrix) pdf
42E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer1e-5-1.292e+010.000059.01.97%12.00.56%motif file (matrix) pdf
43E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer1e-5-1.191e+010.000122.00.73%0.00.00%motif file (matrix) pdf
44FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer1e-5-1.182e+010.0001146.04.87%54.22.52%motif file (matrix) pdf
45SeqBias: CG bias1e-4-1.110e+010.00012014.067.13%1320.861.47%motif file (matrix) pdf
46GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-4-1.086e+010.0002142.04.73%54.82.55%motif file (matrix) pdf
47Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer1e-4-1.083e+010.0002164.05.47%66.13.08%motif file (matrix) pdf
48MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-4-1.027e+010.0003132.04.40%50.12.33%motif file (matrix) pdf
49Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer1e-4-1.026e+010.000327.00.90%2.90.13%motif file (matrix) pdf
50Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-4-1.005e+010.0003244.08.13%114.25.31%motif file (matrix) pdf
51Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer1e-4-9.951e+000.0004391.013.03%204.99.53%motif file (matrix) pdf
52EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer1e-4-9.694e+000.000583.02.77%26.41.23%motif file (matrix) pdf
53RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-4-9.599e+000.000550.01.67%11.50.54%motif file (matrix) pdf
54Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-4-9.451e+000.000661.02.03%16.10.75%motif file (matrix) pdf
55SeqBias: GA-repeat1e-4-9.367e+000.00061134.037.80%702.432.69%motif file (matrix) pdf
56BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-4-9.317e+000.0006211.07.03%97.94.56%motif file (matrix) pdf
57Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-4-9.223e+000.000728.00.93%3.00.14%motif file (matrix) pdf
58RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer1e-3-9.170e+000.000797.03.23%34.41.60%motif file (matrix) pdf
59BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer1e-3-9.170e+000.000775.02.50%23.61.10%motif file (matrix) pdf
60c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer1e-3-8.762e+000.001061.02.03%17.30.80%motif file (matrix) pdf
61FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-3-8.703e+000.001199.03.30%36.21.69%motif file (matrix) pdf
62FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-3-8.630e+000.001169.02.30%21.51.00%motif file (matrix) pdf
63AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-3-8.583e+000.001281.02.70%27.21.27%motif file (matrix) pdf
64Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer1e-3-8.482e+000.0013393.013.10%212.99.91%motif file (matrix) pdf
65Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-3-8.360e+000.001466.02.20%20.50.95%motif file (matrix) pdf
66AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer1e-3-8.324e+000.0014202.06.73%95.24.43%motif file (matrix) pdf
67ETS(ETS)/Promoter/Homer1e-3-8.206e+000.001646.01.53%11.60.54%motif file (matrix) pdf
68MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer1e-3-7.933e+000.0020118.03.93%48.62.26%motif file (matrix) pdf
69SeqBias: polyC-repeat1e-3-7.880e+000.00212824.094.13%1969.391.65%motif file (matrix) pdf
70PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer1e-3-7.867e+000.002145.01.50%12.00.56%motif file (matrix) pdf
71PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-3-7.767e+000.002368.02.27%22.41.04%motif file (matrix) pdf
72Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)1e-3-7.733e+000.0024142.04.73%62.72.92%motif file (matrix) pdf
73ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-3-7.639e+000.0026203.06.77%99.04.61%motif file (matrix) pdf
74Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-3-7.605e+000.0026383.012.77%210.59.80%motif file (matrix) pdf
75MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-3-7.603e+000.0026249.08.30%126.85.90%motif file (matrix) pdf
76E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-3-7.588e+000.0026244.08.13%123.75.76%motif file (matrix) pdf
77Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer1e-3-7.458e+000.002932.01.07%6.30.29%motif file (matrix) pdf
78TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-2-6.887e+000.005128.00.93%5.20.24%motif file (matrix) pdf
79SeqBias: polyA-repeat1e-2-6.871e+000.00512526.084.20%1737.780.87%motif file (matrix) pdf
80Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer1e-2-6.774e+000.005574.02.47%27.51.28%motif file (matrix) pdf
81Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer1e-2-6.413e+000.007861.02.03%21.30.99%motif file (matrix) pdf
82SUT1?/SacCer-Promoters/Homer1e-2-6.279e+000.00881459.048.63%956.044.49%motif file (matrix) pdf
83Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-2-6.031e+000.0112178.05.93%89.44.16%motif file (matrix) pdf
84Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer1e-2-5.964e+000.011828.00.93%7.00.32%motif file (matrix) pdf
85SeqBias: CG-repeat1e-2-5.511e+000.0184622.020.73%381.617.76%motif file (matrix) pdf
86EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-2-5.500e+000.018492.03.07%40.11.87%motif file (matrix) pdf
87ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer1e-2-5.382e+000.020579.02.63%33.21.54%motif file (matrix) pdf
88Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-2-5.283e+000.022343.01.43%14.80.69%motif file (matrix) pdf
89Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-2-5.254e+000.0227205.06.83%109.55.10%motif file (matrix) pdf
90HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer1e-2-5.215e+000.0234118.03.93%56.22.61%motif file (matrix) pdf
91Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-2-5.163e+000.0243392.013.07%231.010.75%motif file (matrix) pdf
92Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-2-5.109e+000.0254114.03.80%54.82.55%motif file (matrix) pdf
93RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer1e-2-5.050e+000.026763.02.10%25.41.18%motif file (matrix) pdf
94RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer1e-2-4.866e+000.031764.02.13%26.11.21%motif file (matrix) pdf
95ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer1e-2-4.865e+000.03179.00.30%0.40.02%motif file (matrix) pdf
96Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-2-4.789e+000.0335292.09.73%167.27.78%motif file (matrix) pdf
97Unknown2/Drosophila-Promoters/Homer1e-2-4.653e+000.0380154.05.13%80.13.73%motif file (matrix) pdf