Homer de novo Motif Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/98/TI//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3000
Total background sequences = 2149
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-121	-2.793e+02	34.00%	7.58%	20.6bp (19.3bp)	Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer(0.971) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-58	-1.339e+02	25.87%	8.73%	21.2bp (28.9bp)	POL009.1_DCE_S_II/Jaspar(0.860) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-46	-1.071e+02	39.77%	21.05%	19.8bp (23.3bp)	HOXA2/MA0900.1/Jaspar(0.845) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-45	-1.057e+02	10.83%	1.49%	21.3bp (14.7bp)	SWI6(MacIsaac)/Yeast(0.862) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-35	-8.187e+01	5.97%	0.24%	19.4bp (22.5bp)	SP1/MA0079.3/Jaspar(0.944) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-35	-8.099e+01	12.87%	3.37%	18.8bp (27.0bp)	EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.759) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-34	-8.054e+01	13.57%	3.80%	20.3bp (47.9bp)	ERF109/MA1053.1/Jaspar(0.904) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-20	-4.828e+01	6.40%	1.34%	19.3bp (32.1bp)	Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer(0.768) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-20	-4.677e+01	3.27%	0.13%	20.6bp (0.0bp)	SeqBias: GCW-triplet(0.750) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-19	-4.552e+01	4.43%	0.54%	18.2bp (6.2bp)	YDR026C(MacIsaac)/Yeast(0.852) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-19	-4.476e+01	9.80%	3.40%	20.3bp (28.7bp)	GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer(0.810) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-16	-3.686e+01	2.47%	0.07%	21.0bp (8.4bp)	MBP1/MA0329.1/Jaspar(0.786) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-14	-3.308e+01	2.97%	0.32%	17.7bp (8.1bp)	DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap(0.712) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-12	-2.833e+01	3.30%	0.59%	21.8bp (12.9bp)	vvl/dmmpmm(Bigfoot)/fly(0.709) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-10	-2.458e+01	2.00%	0.15%	19.1bp (6.9bp)	PB0131.1_Gmeb1_2/Jaspar(0.724) More Information \| Similar Motifs Found	motif file (matrix)
16 *		1e-10	-2.421e+01	1.83%	0.09%	19.4bp (8.8bp)	REL/MA0101.1/Jaspar(0.792) More Information \| Similar Motifs Found	motif file (matrix)