Homer de novo Motif Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/197/CI//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3000
Total background sequences = 2674
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-96-2.218e+0216.00%1.38%17.3bp (28.9bp)GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.948)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-83-1.916e+0235.63%13.67%19.1bp (22.7bp)FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer(0.960)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-76-1.772e+0212.07%0.79%17.7bp (17.0bp)GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.945)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-37-8.633e+019.73%1.96%17.3bp (22.1bp)Tal1(0.721)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-35-8.184e+0117.50%6.74%19.0bp (21.9bp)TEAD3/MA0808.1/Jaspar(0.965)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-32-7.534e+0129.70%16.30%19.6bp (22.8bp)AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer(0.886)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-24-5.716e+0113.93%5.77%17.9bp (25.6bp)YPR013C/MA0434.1/Jaspar(0.753)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-22-5.106e+0112.33%5.08%18.1bp (23.7bp)TFCP2/MA0145.3/Jaspar(0.764)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-17-4.070e+014.87%1.07%19.4bp (18.9bp)ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer(0.929)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-16-3.854e+014.57%1.01%19.8bp (22.1bp)ABF2/MA0266.1/Jaspar(0.772)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-13-3.207e+012.83%0.40%17.6bp (13.4bp)CTCF/MA0139.1/Jaspar(0.825)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-13-3.153e+012.80%0.41%21.3bp (23.9bp)Hand1::Tcf3/MA0092.1/Jaspar(0.802)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-13-3.010e+012.80%0.43%19.6bp (21.3bp)PB0021.1_Gata3_1/Jaspar(0.770)
More Information | Similar Motifs Found		motif file (matrix)
14 *1e-8-2.059e+011.57%0.15%16.4bp (14.2bp)NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer(0.731)
More Information | Similar Motifs Found		motif file (matrix)
15 *1e-8-1.947e+011.50%0.16%17.3bp (15.2bp)SRD1/MA0389.1/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
16 *1e-8-1.874e+012.13%0.48%20.2bp (13.6bp)GCN4(MacIsaac)/Yeast(0.948)
More Information | Similar Motifs Found		motif file (matrix)
17 *1e-8-1.857e+011.63%0.24%20.2bp (11.0bp)PB0029.1_Hic1_1/Jaspar(0.723)
More Information | Similar Motifs Found		motif file (matrix)
18 *1e-7-1.722e+011.27%0.13%18.3bp (19.6bp)XBP1/Literature(Harbison)/Yeast(0.686)
More Information | Similar Motifs Found		motif file (matrix)
19 *1e-7-1.648e+011.00%0.05%21.4bp (4.6bp)TATA-box/Drosophila-Promoters/Homer(0.797)
More Information | Similar Motifs Found		motif file (matrix)
20 *1e-7-1.619e+011.57%0.28%16.2bp (10.9bp)Trl/dmmpmm(Pollard)/fly(0.676)
More Information | Similar Motifs Found		motif file (matrix)
21 *1e-6-1.529e+012.17%0.60%21.0bp (14.1bp)STP1(MacIsaac)/Yeast(0.800)
More Information | Similar Motifs Found		motif file (matrix)
22 *1e-6-1.465e+010.90%0.06%17.2bp (6.3bp)SeqBias: GA-repeat(0.813)
More Information | Similar Motifs Found		motif file (matrix)
23 *1e-6-1.415e+011.73%0.43%21.1bp (13.0bp)Nr2e1/MA0676.1/Jaspar(0.794)
More Information | Similar Motifs Found		motif file (matrix)
24 *1e-3-8.095e+003.50%1.99%20.6bp (18.3bp)SeqBias: CA-repeat(0.901)
More Information | Similar Motifs Found		motif file (matrix)