Homer de novo Motif Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/98/CI//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3000
Total background sequences = 2245
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-109	-2.521e+02	40.30%	13.06%	19.0bp (19.0bp)	Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer(0.944) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-82	-1.897e+02	19.27%	2.93%	17.9bp (26.5bp)	Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.988) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-60	-1.399e+02	27.73%	9.87%	17.6bp (21.1bp)	Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.922) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-49	-1.131e+02	20.87%	6.76%	19.6bp (16.9bp)	Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer(0.927) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-28	-6.510e+01	4.43%	0.14%	20.2bp (0.0bp)	SUT1/SUT1_YPD/[](Harbison)/Yeast(0.859) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-19	-4.437e+01	2.83%	0.05%	18.7bp (0.0bp)	POL013.1_MED-1/Jaspar(0.756) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-18	-4.233e+01	4.07%	0.51%	22.5bp (11.0bp)	INO4(MacIsaac)/Yeast(0.790) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-18	-4.176e+01	8.67%	2.96%	19.1bp (26.3bp)	ABI4(1)(AP2/EREBP)/Zea mays/AthaMap(0.772) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-14	-3.238e+01	2.57%	0.21%	19.7bp (10.6bp)	EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.698) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-12	-2.893e+01	2.07%	0.10%	19.9bp (11.1bp)	MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast(0.902) More Information \| Similar Motifs Found	motif file (matrix)
11 *		1e-11	-2.760e+01	4.03%	0.99%	19.0bp (20.6bp)	DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap(0.696) More Information \| Similar Motifs Found	motif file (matrix)
12 *		1e-11	-2.641e+01	1.57%	0.04%	19.8bp (10.1bp)	TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer(0.795) More Information \| Similar Motifs Found	motif file (matrix)
13 *		1e-9	-2.300e+01	4.20%	1.30%	20.4bp (30.5bp)	SWI6(MacIsaac)/Yeast(0.764) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-9	-2.255e+01	1.67%	0.09%	19.3bp (8.6bp)	LEU3(MacIsaac)/Yeast(0.769) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-9	-2.165e+01	2.30%	0.38%	17.5bp (10.7bp)	Hmx1/MA0896.1/Jaspar(0.688) More Information \| Similar Motifs Found	motif file (matrix)
16 *		1e-9	-2.135e+01	6.53%	2.92%	19.0bp (21.1bp)	ERF094/MA1049.1/Jaspar(0.874) More Information \| Similar Motifs Found	motif file (matrix)
17 *		1e-8	-1.846e+01	1.87%	0.30%	20.1bp (10.2bp)	Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer(0.732) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-7	-1.759e+01	1.70%	0.23%	19.2bp (14.5bp)	CRZ1(MacIsaac)/Yeast(0.725) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-6	-1.568e+01	3.43%	1.29%	19.0bp (16.1bp)	ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast(0.733) More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-5	-1.157e+01	1.53%	0.39%	20.0bp (15.2bp)	PB0178.1_Sox8_2/Jaspar(0.711) More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-4	-1.072e+01	0.90%	0.12%	16.6bp (0.0bp)	NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer(0.785) More Information \| Similar Motifs Found	motif file (matrix)